Variant report

Variant	rs11967173
Chromosome Location	chr6:79576630-79576631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr6:79576338-79577238	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:79575800..79578597-chr6:79786334..79789260,2	MCF-7	breast:
2	chr6:79575390..79577053-chr6:79941953..79944016,2	K562	blood:
3	chr6:79576198..79578688-chr6:79580398..79583072,2	K562	blood:

Variant related genes	Relation type
IRAK1BP1	TF binding region
ENSG00000146243	Chromatin interaction
ENSG00000270362	Chromatin interaction
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1415863	0.87[EUR][1000 genomes]
rs1538234	0.87[EUR][1000 genomes]
rs1890230	0.87[EUR][1000 genomes]
rs28811946	0.94[EUR][1000 genomes]
rs4706748	0.87[EUR][1000 genomes]
rs4706749	0.87[EUR][1000 genomes]
rs56118785	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58047896	0.82[EUR][1000 genomes]
rs6454094	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6454095	0.87[EUR][1000 genomes]
rs6918296	0.85[EUR][1000 genomes]
rs6923327	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929315	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6940635	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6941107	0.91[EUR][1000 genomes]
rs73764080	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73764089	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7739298	0.87[EUR][1000 genomes]
rs7747479	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7754715	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7758407	0.94[EUR][1000 genomes]
rs7775074	0.87[EUR][1000 genomes]
rs7776322	0.91[EUR][1000 genomes]
rs9343862	0.81[EUR][1000 genomes]
rs9361485	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv970379	chr6:79571879-79578296	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79569800-79576800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:79574600-79578400	Active TSS	K562	blood
3	chr6:79576000-79576800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:79576000-79576800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr6:79576000-79578600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:79576200-79576800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:79576200-79576800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:79576200-79576800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:79576200-79576800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:79576200-79576800	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:79576200-79577400	Active TSS	Adipose Nuclei	Adipose
12	chr6:79576200-79577800	Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr6:79576200-79578000	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr6:79576200-79578000	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr6:79576200-79578200	Active TSS	Brain Hippocampus Middle	brain
16	chr6:79576200-79578200	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr6:79576200-79578200	Active TSS	A549	lung
18	chr6:79576200-79578400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:79576200-79578400	Active TSS	Hela-S3	cervix
20	chr6:79576200-79578600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:79576200-79578600	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:79576200-79578600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:79576200-79578600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:79576400-79576800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:79576400-79576800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr6:79576400-79576800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:79576400-79576800	Enhancers	Primary B cells from cord blood	blood
28	chr6:79576400-79576800	Enhancers	Primary B cells from peripheral blood	blood
29	chr6:79576400-79576800	Enhancers	Primary T cells from cord blood	blood
30	chr6:79576400-79576800	Enhancers	Primary T cells fromperipheralblood	blood
31	chr6:79576400-79576800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:79576400-79576800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:79576400-79576800	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr6:79576400-79576800	Enhancers	Liver	Liver
35	chr6:79576400-79576800	Enhancers	Colon Smooth Muscle	Colon
36	chr6:79576400-79576800	Enhancers	Fetal Intestine Small	intestine
37	chr6:79576400-79576800	Enhancers	Gastric	stomach
38	chr6:79576400-79576800	Enhancers	Pancreas	Pancrea
39	chr6:79576400-79576800	Enhancers	Small Intestine	intestine
40	chr6:79576400-79576800	Enhancers	Stomach Mucosa	stomach
41	chr6:79576400-79576800	Enhancers	Osteobl	bone
42	chr6:79576400-79577800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:79576400-79577800	Active TSS	HUVEC	blood vessel
44	chr6:79576400-79578000	Active TSS	Fetal Brain Female	brain
45	chr6:79576400-79578000	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr6:79576400-79578200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:79576400-79578200	Active TSS	Muscle Satellite Cultured Cells	--
48	chr6:79576400-79578200	Active TSS	Brain Angular Gyrus	brain
49	chr6:79576400-79578200	Active TSS	Psoas Muscle	Psoas
50	chr6:79576400-79578200	Active TSS	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links