Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79558999..79561726-chr6:79563730..79565524,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11967173	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1415862	0.81[AMR][1000 genomes]
rs1415863	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1538234	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1890230	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28811946	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4706748	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4706749	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56118785	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58047896	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6454094	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6918296	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6923327	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940635	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6941107	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73764089	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7739298	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7747479	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7754715	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7758407	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7775074	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7776322	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9343862	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9361485	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79553600-79564200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:79553800-79562400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:79554200-79564200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:79555000-79562400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:79555800-79576400	Weak transcription	Left Ventricle	heart
6	chr6:79556200-79562400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:79557000-79560400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:79557800-79571200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:79559000-79564000	Weak transcription	Ovary	ovary
10	chr6:79559200-79560400	Weak transcription	HSMM	muscle
11	chr6:79559200-79563800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:79559200-79564000	Weak transcription	Brain Substantia Nigra	brain
13	chr6:79560000-79562000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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