Variant report

Variant	rs7739298
Chromosome Location	chr6:79754360-79754361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79747179..79748938-chr6:79752638..79755087,2	K562	blood:
2	chr6:79753793..79756103-chr6:79759562..79763540,4	K562	blood:
3	chr6:79752412..79754559-chr6:79755981..79758600,2	K562	blood:
4	chr6:79754347..79756749-chr6:79764900..79766889,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11967173	0.87[EUR][1000 genomes]
rs12529043	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1413967	0.86[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1415861	0.86[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs1415862	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415863	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28811946	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547969	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4706748	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56118785	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58047896	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454094	0.86[ASW][hapmap];0.86[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6454095	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900076	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6906655	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6916942	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6918296	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923327	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6929315	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940635	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941107	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764080	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73764089	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7747479	0.86[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756903	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7758407	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775074	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776322	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343862	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361485	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687600-79775000	Strong transcription	Dnd41	blood
2	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:79707400-79755800	Weak transcription	Pancreas	Pancrea
4	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
6	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
8	chr6:79717200-79765600	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:79724600-79765200	Weak transcription	Stomach Mucosa	stomach
10	chr6:79726000-79765800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:79726600-79766200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:79727000-79767800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:79727600-79761800	Weak transcription	Fetal Brain Male	brain
14	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:79730600-79776600	Weak transcription	Aorta	Aorta
16	chr6:79732200-79774600	Weak transcription	Gastric	stomach
17	chr6:79732400-79756000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:79733000-79761800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:79733000-79765800	Weak transcription	Lung	lung
20	chr6:79733200-79761800	Weak transcription	Thymus	Thymus
21	chr6:79733600-79765200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:79733800-79759800	Weak transcription	HMEC	breast
23	chr6:79734000-79768000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:79734800-79758400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:79736000-79773600	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:79736200-79762000	Weak transcription	Brain Anterior Caudate	brain
27	chr6:79739000-79780000	Weak transcription	NHLF	lung
28	chr6:79739400-79769400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:79741000-79761800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:79742000-79785400	Weak transcription	HSMMtube	muscle
31	chr6:79742400-79760800	Weak transcription	NH-A	brain
32	chr6:79742400-79765200	Weak transcription	Small Intestine	intestine
33	chr6:79742600-79755800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:79742600-79773800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:79743400-79759600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:79743400-79769600	Weak transcription	NHEK	skin
37	chr6:79743800-79755600	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:79744200-79756000	Strong transcription	Primary B cells from cord blood	blood
39	chr6:79744800-79755600	Weak transcription	Brain Substantia Nigra	brain
40	chr6:79745600-79756000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:79745600-79756800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:79745800-79761800	Weak transcription	Osteobl	bone
43	chr6:79746200-79756200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:79746200-79756800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr6:79746800-79755800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:79747000-79754400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:79747200-79760800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:79748200-79755800	Weak transcription	Fetal Intestine Small	intestine
49	chr6:79748200-79757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr6:79748200-79761800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links