Variant report

Variant	rs7756903
Chromosome Location	chr6:79862848-79862849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79861129..79863468-chr6:79865472..79868083,2	MCF-7	breast:
2	chr6:79786929..79788709-chr6:79859954..79862909,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12529043	0.87[CEU][hapmap]
rs1413967	0.87[CEU][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1415861	0.87[CEU][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes]
rs1415862	0.88[AMR][1000 genomes]
rs1415863	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1538234	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1890230	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4547969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706748	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4706749	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6454094	0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6454095	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6900076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6916942	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6918296	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6929315	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6940635	0.88[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7739298	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7747479	0.87[CEU][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7775074	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9343862	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9361485	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79859400-79864400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:79859600-79863800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:79861400-79863000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:79861400-79864200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:79862200-79863400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:79862200-79867000	Weak transcription	A549	lung
7	chr6:79862400-79863000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:79862400-79863000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:79862400-79863200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:79862600-79866400	Weak transcription	HepG2	liver
11	chr6:79862800-79863600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:79862800-79864000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:79862800-79864200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:79862800-79864200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:79862800-79864400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:79862800-79864600	Enhancers	HUES48 Cell Line	embryonic stem cell

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