Variant report

Variant	rs6923327
Chromosome Location	chr6:79574875-79574876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr6:79574704-79575069	K562	blood:	n/a	chr6:79574878-79574896
2	MAFF	chr6:79574778-79575009	HepG2	liver:	n/a	chr6:79574878-79574896
3	MAFK	chr6:79574734-79575064	HepG2	liver:	n/a	chr6:79574880-79574895
4	MAFK	chr6:79574769-79575080	K562	blood:	n/a	chr6:79574880-79574895
5	MAFK	chr6:79574761-79575044	IMR90	lung:	n/a	chr6:79574880-79574895
6	MAFK	chr6:79574782-79575018	HepG2	liver:	n/a	chr6:79574880-79574895

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:79574843-79574893	HRE	kidney:	n/a
2	chr6:79574843-79574893	HCT-116	colon:	n/a
3	chr6:79574843-79574893	GM12878	blood:	n/a
4	chr6:79574843-79574893	CMK	blood:	n/a
5	chr6:79574843-79574893	K562	blood:	n/a
6	chr6:79574843-79574893	A549	lung:	n/a
7	chr6:79574843-79574893	HepG2	liver:	n/a
8	chr6:79574843-79574893	RPTEC	kidney:	n/a
9	chr6:79574843-79574893	AG09309	skin:	n/a
10	chr6:79574843-79574893	HRPEpiC	eye:	n/a
11	chr6:79574843-79574893	MCF10A-Er-Src	breast:	n/a
12	chr6:79574843-79574893	SKMC	muscle:	n/a
13	chr6:79574843-79574893	AG09319	gingival:	n/a
14	chr6:79574843-79574893	HCM	heart:	n/a
15	chr6:79574843-79574893	Hela-S3	cervix:	n/a
16	chr6:79574843-79574893	SAEC	small airway:	n/a
17	chr6:79574843-79574893	ECC-1	luminal epithelium:	n/a
18	chr6:79574843-79574893	HPAEpiC	pulmonary alveolar:	n/a
19	chr6:79574843-79574893	ovcar-3	ovarian:	n/a
20	chr6:79574843-79574893	PrEC	prostate:	n/a
21	chr6:79574843-79574893	LNCaP	prostate:	n/a
22	chr6:79574843-79574893	MCF-7	breast:	n/a
23	chr6:79574843-79574893	GM19239	blood:	n/a
24	chr6:79574843-79574893	HIPEpiC	eye:	n/a
25	chr6:79574843-79574893	SK-N-SH	brain:	n/a
26	chr6:79574843-79574893	ProgFib	skin:	n/a
27	chr6:79574843-79574893	HL-60	blood:	n/a
28	chr6:79574843-79574893	BE2_C	brain:	n/a
29	chr6:79574843-79574893	NT2-D1	testis:	n/a
30	chr6:79574843-79574893	PANC-1	pancreas:	n/a
31	chr6:79574843-79574893	AG04449	skin:	fetal
32	chr6:79574843-79574893	NH-A	brain:	n/a
33	chr6:79574843-79574893	HCF	heart:	n/a
34	chr6:79574843-79574893	SK-N-MC	brain:	n/a
35	chr6:79574843-79574893	HNPCEpiC	eye:	n/a
36	chr6:79574843-79574893	SK-N-SH_RA	brain:	n/a
37	chr6:79574843-79574893	H1-hESC	embryonic stem cell:	embryo
38	chr6:79574843-79574893	HCPEpiC	choroid plexus:	n/a
39	chr6:79574843-79574893	Hepatocyte	liver:	n/a
40	chr6:79574843-79574893	Jurkat	blood:	n/a
41	chr6:79574843-79574893	AG10803	skin:	n/a
42	chr6:79574843-79574893	HUVEC	blood vessel:	n/a
43	chr6:79574843-79574893	GM12892	blood:	n/a
44	chr6:79574843-79574893	GM06990	blood:	n/a
45	chr6:79574843-79574893	HEEpiC	esophagus:	n/a
46	chr6:79574843-79574893	U87	brain:	n/a
47	chr6:79574843-79574893	HEK293	kidney:	embryo
48	chr6:79574843-79574893	IMR90	lung:	fetal
49	chr6:79574843-79574893	AoSMC	blood vessel:	n/a
50	chr6:79574843-79574893	BJ	skin:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79568772..79571138-chr6:79573163..79575541,2	K562	blood:
2	chr6:79572341..79575161-chr6:79575433..79577660,3	K562	blood:

No data

Variant related genes	Relation type
IRAK1BP1	TF binding region
IRAK1BP1	CpG island
ENSG00000146243	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11967173	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12529043	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1415861	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1415862	0.87[CEU][hapmap];1.00[TSI][hapmap]
rs1415863	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1538234	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1890230	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28811946	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4706748	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4706749	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56118785	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58047896	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6454094	0.86[ASW][hapmap];0.86[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6454095	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6918296	0.85[EUR][1000 genomes]
rs6929315	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6940635	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6941107	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73764080	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73764089	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7739298	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7747479	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7754715	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7758407	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7775074	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7776322	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9343862	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9361485	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv970379	chr6:79571879-79578296	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79555800-79576400	Weak transcription	Left Ventricle	heart
2	chr6:79563000-79576200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:79564200-79576200	Weak transcription	Right Ventricle	heart
4	chr6:79566200-79576400	Weak transcription	Gastric	stomach
5	chr6:79568800-79576400	Weak transcription	Pancreas	Pancrea
6	chr6:79569800-79576800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:79571600-79576400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:79573000-79576400	Weak transcription	Primary B cells from cord blood	blood
9	chr6:79573600-79576400	Weak transcription	Small Intestine	intestine
10	chr6:79574600-79578400	Active TSS	K562	blood
11	chr6:79574800-79575000	Enhancers	Brain Anterior Caudate	brain

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