Variant report

Variant	rs58047896
Chromosome Location	chr6:79642711-79642712
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11967173	0.82[EUR][1000 genomes]
rs1413967	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1415861	0.85[AMR][1000 genomes]
rs1415862	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1415863	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890230	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28811946	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547969	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4706748	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56118785	0.97[AMR][1000 genomes]
rs6454094	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6454095	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900076	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6906655	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6918296	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923327	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6929315	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6940635	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6941107	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764080	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73764089	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7739298	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747479	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7758407	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775074	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776322	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343862	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79626000-79644000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:79639600-79650400	Weak transcription	HSMMtube	muscle
3	chr6:79640400-79655000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:79640600-79648800	Weak transcription	Fetal Kidney	kidney
5	chr6:79640800-79643000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:79641400-79647000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:79641600-79650200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:79642400-79649400	Weak transcription	Adipose Nuclei	Adipose
9	chr6:79642400-79650000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:79642400-79653000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:79642600-79646200	Weak transcription	HSMM	muscle
12	chr6:79642600-79649400	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:79642600-79649400	Weak transcription	Osteobl	bone
14	chr6:79642600-79658200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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