Variant report

Variant	rs7756852
Chromosome Location	chr6:107047647-107047648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1026622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153010	0.91[AFR][1000 genomes]
rs11759221	0.96[EUR][1000 genomes]
rs11968064	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12210786	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12214557	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526141	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17052215	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2353034	0.88[AFR][1000 genomes]
rs2883075	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945758	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945759	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4946768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57424436	0.99[EUR][1000 genomes]
rs58972320	0.99[EUR][1000 genomes]
rs6911512	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911551	0.91[AFR][1000 genomes]
rs6935354	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7738230	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7741101	1.00[YRI][hapmap]
rs7751749	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7770930	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9373882	0.91[AFR][1000 genomes]
rs9384622	0.99[EUR][1000 genomes]
rs9384623	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386574	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400031	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480692	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106996400-107074000	Weak transcription	Fetal Kidney	kidney
2	chr6:107010200-107064600	Weak transcription	A549	lung
3	chr6:107018000-107052600	Weak transcription	Colonic Mucosa	Colon
4	chr6:107018400-107066400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:107018400-107076400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:107018800-107076200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:107019000-107076200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:107019800-107076400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:107022000-107076400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:107023400-107050200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:107023400-107068800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:107023400-107076600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:107029600-107052600	Weak transcription	Pancreas	Pancrea
14	chr6:107030800-107076800	Weak transcription	Small Intestine	intestine
15	chr6:107031200-107052200	Weak transcription	Thymus	Thymus
16	chr6:107031200-107052600	Weak transcription	Gastric	stomach
17	chr6:107031200-107052800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:107031200-107058800	Weak transcription	Psoas Muscle	Psoas
19	chr6:107031200-107077000	Weak transcription	Spleen	Spleen
20	chr6:107031400-107048000	Weak transcription	Lung	lung
21	chr6:107031400-107065200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:107031400-107076200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:107031400-107076600	Weak transcription	Brain Angular Gyrus	brain
24	chr6:107031800-107076600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:107032600-107054000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:107033000-107076600	Weak transcription	Aorta	Aorta
27	chr6:107033200-107061000	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:107034400-107057400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:107035000-107047800	Weak transcription	Fetal Brain Male	brain
30	chr6:107035400-107076600	Weak transcription	Right Ventricle	heart
31	chr6:107035600-107054600	Weak transcription	Hela-S3	cervix
32	chr6:107035800-107070400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:107035800-107070400	Weak transcription	Fetal Lung	lung
34	chr6:107036000-107051800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:107037200-107053800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:107039200-107076400	Weak transcription	Brain Germinal Matrix	brain
37	chr6:107039200-107076600	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:107039600-107052600	Weak transcription	Fetal Intestine Small	intestine
39	chr6:107039600-107076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:107039600-107076600	Weak transcription	Fetal Stomach	stomach
41	chr6:107039800-107048800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:107039800-107051800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:107039800-107052200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:107039800-107076200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr6:107039800-107076400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr6:107040000-107058800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr6:107040000-107059000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:107040000-107061400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:107040000-107062800	Weak transcription	NHLF	lung
50	chr6:107040000-107065200	Weak transcription	HepG2	liver

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