Variant report

Variant	rs9384622
Chromosome Location	chr6:107013128-107013129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107008446..107010427-chr6:107011380..107014015,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1026622	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11759221	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11968064	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12210786	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12214557	0.98[EUR][1000 genomes]
rs12523774	0.94[ASN][1000 genomes]
rs12526141	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17052215	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066202	0.93[ASN][1000 genomes]
rs2126395	0.88[ASN][1000 genomes]
rs2883075	0.93[EUR][1000 genomes]
rs3747790	0.96[ASN][1000 genomes]
rs4945758	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4946763	0.90[ASN][1000 genomes]
rs4946764	0.89[AFR][1000 genomes]
rs4946768	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4946774	0.96[EUR][1000 genomes]
rs57424436	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58972320	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6911512	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6940963	0.94[AFR][1000 genomes]
rs7738230	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751749	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7756852	0.99[EUR][1000 genomes]
rs9384623	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9384624	0.99[EUR][1000 genomes]
rs9386567	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9386571	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9386574	0.97[EUR][1000 genomes]
rs9398095	0.87[ASN][1000 genomes]
rs9400031	0.98[EUR][1000 genomes]
rs9400032	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9480687	0.96[ASN][1000 genomes]
rs9480692	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9486406	0.96[ASN][1000 genomes]
rs962476	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs965347	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106964800-107029800	Weak transcription	Small Intestine	intestine
2	chr6:106970600-107022400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:106985800-107019200	Weak transcription	Aorta	Aorta
4	chr6:106994000-107017800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:106994200-107019400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:106994200-107019600	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr6:106995000-107019400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:106995200-107016200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:106995200-107018800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:106996200-107017200	Weak transcription	HSMM	muscle
11	chr6:106996200-107018400	Weak transcription	Fetal Stomach	stomach
12	chr6:106996200-107022400	Weak transcription	Ovary	ovary
13	chr6:106996200-107023000	Weak transcription	Stomach Mucosa	stomach
14	chr6:106996400-107027000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr6:106996400-107030800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:106996400-107074000	Weak transcription	Fetal Kidney	kidney
17	chr6:106996600-107018400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:106996600-107022400	Weak transcription	HUVEC	blood vessel
19	chr6:106999000-107022400	Weak transcription	Right Ventricle	heart
20	chr6:106999200-107022400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:106999800-107030600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:107000400-107018800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:107000800-107021200	Strong transcription	Primary B cells from cord blood	blood
24	chr6:107001200-107014600	Strong transcription	GM12878-XiMat	blood
25	chr6:107001400-107018600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:107002000-107016000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:107002200-107019000	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:107002200-107020200	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:107002200-107020200	Weak transcription	Pancreas	Pancrea
30	chr6:107002400-107023000	Weak transcription	Gastric	stomach
31	chr6:107002800-107017400	Weak transcription	Lung	lung
32	chr6:107003800-107019400	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:107004000-107015800	Weak transcription	Esophagus	oesophagus
34	chr6:107004200-107016000	Weak transcription	Colonic Mucosa	Colon
35	chr6:107005000-107018800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr6:107005000-107021400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:107005000-107021800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:107005200-107014200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:107005200-107019200	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:107005400-107013400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr6:107006000-107014200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:107006200-107014400	Strong transcription	Liver	Liver
43	chr6:107006200-107019800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:107006800-107019000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:107007400-107014200	Strong transcription	Thymus	Thymus
46	chr6:107007800-107014400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:107008400-107027600	Strong transcription	Primary T cells from cord blood	blood
48	chr6:107008600-107018800	Strong transcription	Dnd41	blood
49	chr6:107009400-107017400	Weak transcription	Left Ventricle	heart
50	chr6:107009800-107015400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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