Variant report

Variant	rs9400032
Chromosome Location	chr6:107060739-107060740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:107054582..107057140-chr6:107059878..107061838,2	K562	blood:
2	chr6:107054582..107058498-chr6:107059878..107063321,3	K562	blood:
3	chr6:107059791..107062552-chr6:107074929..107076473,2	K562	blood:

Variant related genes	Relation type
ENSG00000200295	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1026622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759221	0.95[EUR][1000 genomes]
rs11968064	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12210786	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12214557	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526141	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17052215	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2883075	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945758	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946764	1.00[YRI][hapmap]
rs4946768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57424436	0.98[EUR][1000 genomes]
rs58972320	0.98[EUR][1000 genomes]
rs6911512	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935354	0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7738230	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7751749	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7756852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384622	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9384623	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386574	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400031	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480692	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965347	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106996400-107074000	Weak transcription	Fetal Kidney	kidney
2	chr6:107010200-107064600	Weak transcription	A549	lung
3	chr6:107018400-107066400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:107018400-107076400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:107018800-107076200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:107019000-107076200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:107019800-107076400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:107022000-107076400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:107023400-107068800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:107023400-107076600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:107030800-107076800	Weak transcription	Small Intestine	intestine
12	chr6:107031200-107077000	Weak transcription	Spleen	Spleen
13	chr6:107031400-107065200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:107031400-107076200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:107031400-107076600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:107031800-107076600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:107033000-107076600	Weak transcription	Aorta	Aorta
18	chr6:107033200-107061000	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:107035400-107076600	Weak transcription	Right Ventricle	heart
20	chr6:107035800-107070400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:107035800-107070400	Weak transcription	Fetal Lung	lung
22	chr6:107039200-107076400	Weak transcription	Brain Germinal Matrix	brain
23	chr6:107039200-107076600	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:107039600-107076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:107039600-107076600	Weak transcription	Fetal Stomach	stomach
26	chr6:107039800-107076200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:107039800-107076400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:107040000-107061400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:107040000-107062800	Weak transcription	NHLF	lung
30	chr6:107040000-107065200	Weak transcription	HepG2	liver
31	chr6:107040000-107066000	Weak transcription	Brain Anterior Caudate	brain
32	chr6:107040000-107068400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:107040000-107076600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:107040000-107076600	Weak transcription	Fetal Intestine Large	intestine
35	chr6:107040200-107064000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:107040200-107064600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:107040200-107064800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:107040200-107065000	Weak transcription	K562	blood
39	chr6:107040200-107068400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:107040200-107070600	Weak transcription	Dnd41	blood
41	chr6:107040200-107076200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr6:107040200-107076400	Weak transcription	Brain Substantia Nigra	brain
43	chr6:107040200-107076600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:107040200-107076600	Weak transcription	Ovary	ovary
45	chr6:107040400-107066400	Weak transcription	Liver	Liver
46	chr6:107040400-107066600	Weak transcription	HSMM	muscle
47	chr6:107040400-107070200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:107045600-107076600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:107048200-107070200	Weak transcription	Lung	lung
50	chr6:107048400-107063400	Weak transcription	Left Ventricle	heart

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