Variant report

Variant	rs7762679
Chromosome Location	chr6:131115817-131115818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10485096	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10499176	1.00[CEU][hapmap]
rs10499178	1.00[CEU][hapmap]
rs17059617	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059726	1.00[CEU][hapmap]
rs17059735	1.00[CEU][hapmap]
rs17059739	1.00[CEU][hapmap]
rs17059760	1.00[CEU][hapmap]
rs17059787	1.00[CEU][hapmap]
rs17059799	1.00[CEU][hapmap]
rs17059801	1.00[CEU][hapmap]
rs17059808	1.00[CEU][hapmap]
rs17059810	1.00[CEU][hapmap]
rs17059851	1.00[CEU][hapmap]
rs17059853	1.00[CEU][hapmap]
rs17059909	1.00[CEU][hapmap]
rs1999473	1.00[CEU][hapmap]
rs2275064	1.00[CEU][hapmap]
rs3777433	1.00[CEU][hapmap]
rs3777444	1.00[CEU][hapmap]
rs3777448	1.00[CEU][hapmap]
rs3777451	1.00[CEU][hapmap]
rs3777456	1.00[CEU][hapmap]
rs3822859	1.00[CEU][hapmap]
rs714709	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1025019	chr6:131074711-131116070	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv604665	chr6:131077027-131115817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604666	chr6:131078180-131122295	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131111000-131117000	Weak transcription	Lung	lung
2	chr6:131113600-131117600	Weak transcription	Ovary	ovary
3	chr6:131114800-131116200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:131115000-131116800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:131115000-131117800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:131115000-131118000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:131115200-131117000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:131115600-131116600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:131115600-131117400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:131115800-131116000	Enhancers	Small Intestine	intestine
11	chr6:131115800-131116200	Weak transcription	Fetal Stomach	stomach
12	chr6:131115800-131118000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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