Variant report

Variant	rs7768450
Chromosome Location	chr6:63936163-63936164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:63935963-63936271	MCF10A-Er-Src	breast:	n/a	chr6:63936106-63936115 chr6:63936106-63936113
2	FOS	chr6:63935967-63936295	MCF10A-Er-Src	breast:	n/a	chr6:63936106-63936115 chr6:63936106-63936113
3	FOS	chr6:63935968-63936265	MCF10A-Er-Src	breast:	n/a	chr6:63936106-63936115 chr6:63936106-63936113
4	FOS	chr6:63936068-63936294	MCF10A-Er-Src	breast:	n/a	chr6:63936106-63936115 chr6:63936106-63936113

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:63935123..63936664-chr6:63993478..63995873,2	MCF-7	breast:

Variant related genes	Relation type
SPTLC1P3	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1613731	1.00[AMR][1000 genomes]
rs1614337	1.00[AMR][1000 genomes]
rs1711895	1.00[AMR][1000 genomes]
rs1711905	1.00[AMR][1000 genomes]
rs1711921	1.00[AMR][1000 genomes]
rs1723521	1.00[AMR][1000 genomes]
rs1741791	1.00[AMR][1000 genomes]
rs1741795	1.00[AMR][1000 genomes]
rs1741796	1.00[AMR][1000 genomes]
rs1741798	1.00[AMR][1000 genomes]
rs1741803	1.00[AMR][1000 genomes]
rs1779743	1.00[AMR][1000 genomes]
rs1779752	1.00[AMR][1000 genomes]
rs1779759	1.00[AMR][1000 genomes]
rs1779763	1.00[AMR][1000 genomes]
rs2219528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254662	1.00[AMR][1000 genomes]
rs2459568	1.00[AMR][1000 genomes]
rs4280947	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6929630	1.00[AMR][1000 genomes]
rs9341779	1.00[AMR][1000 genomes]
rs9352678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9352740	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2758058	chr6:63706622-63985889	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759434	chr6:63706622-63985889	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830673	chr6:63833563-63939177	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv33308	chr6:63919357-63956379	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2762595	chr6:63931504-63948305	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv517212	chr6:63931621-63948305	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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