Variant report

Variant	rs1613731
Chromosome Location	chr6:64061734-64061735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64052335..64054049-chr6:64060592..64063155,2	MCF-7	breast:
2	chr6:64061604..64062576-chr6:64512267..64512790,2	MCF-7	breast:
3	chr6:64060326..64062411-chr6:64092797..64095365,2	K562	blood:
4	chr6:64061577..64062551-chr6:64473988..64474844,2	MCF-7	breast:
5	chr6:64061712..64062525-chr6:64473904..64474743,3	MCF-7	breast:
6	chr6:64059286..64067591-chr6:64279675..64285580,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1197893	1.00[AMR][1000 genomes]
rs1197894	1.00[AMR][1000 genomes]
rs1197895	1.00[AMR][1000 genomes]
rs1197896	1.00[AMR][1000 genomes]
rs1212826	1.00[AMR][1000 genomes]
rs1614337	1.00[AMR][1000 genomes]
rs1615068	1.00[AMR][1000 genomes]
rs1615595	1.00[AMR][1000 genomes]
rs1616743	0.87[AFR][1000 genomes]
rs1681961	1.00[AMR][1000 genomes]
rs1711895	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711905	1.00[AMR][1000 genomes]
rs1711908	1.00[AFR][1000 genomes]
rs1711921	1.00[AMR][1000 genomes]
rs1723521	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741791	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1741795	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741796	1.00[AMR][1000 genomes]
rs1741798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741803	1.00[AMR][1000 genomes]
rs1744130	1.00[AMR][1000 genomes]
rs1744151	1.00[AMR][1000 genomes]
rs1744157	1.00[AMR][1000 genomes]
rs1779743	1.00[AMR][1000 genomes]
rs1779750	1.00[AMR][1000 genomes]
rs1779751	1.00[AMR][1000 genomes]
rs1779752	1.00[AMR][1000 genomes]
rs1779759	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779763	1.00[AMR][1000 genomes]
rs2219528	1.00[AMR][1000 genomes]
rs2254662	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2459568	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622278	1.00[AMR][1000 genomes]
rs2622279	1.00[AMR][1000 genomes]
rs2622290	1.00[AMR][1000 genomes]
rs2622292	1.00[AMR][1000 genomes]
rs2622301	1.00[AMR][1000 genomes]
rs2622303	1.00[AMR][1000 genomes]
rs2622309	1.00[AMR][1000 genomes]
rs2622311	1.00[AMR][1000 genomes]
rs2753063	1.00[AMR][1000 genomes]
rs2758239	1.00[AMR][1000 genomes]
rs2758243	1.00[AMR][1000 genomes]
rs2758249	1.00[AMR][1000 genomes]
rs2800014	1.00[AMR][1000 genomes]
rs2800015	1.00[AMR][1000 genomes]
rs2800016	1.00[AMR][1000 genomes]
rs2800039	1.00[AMR][1000 genomes]
rs2800046	1.00[AMR][1000 genomes]
rs2800053	1.00[AMR][1000 genomes]
rs4280947	1.00[AMR][1000 genomes]
rs6929630	1.00[AMR][1000 genomes]
rs7768450	1.00[AMR][1000 genomes]
rs9341779	1.00[AMR][1000 genomes]
rs9352678	1.00[AMR][1000 genomes]
rs9352740	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64040400-64071200	Weak transcription	Placenta	Placenta
2	chr6:64057200-64062200	Enhancers	Hela-S3	cervix
3	chr6:64058000-64062200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:64058200-64062000	Weak transcription	HepG2	liver
5	chr6:64058400-64062000	Weak transcription	NHLF	lung
6	chr6:64059000-64062200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:64059400-64062200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:64059400-64062400	Weak transcription	Stomach Mucosa	stomach
9	chr6:64059800-64062000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:64059800-64062200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:64059800-64062200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:64059800-64062200	Weak transcription	NHDF-Ad	bronchial
13	chr6:64059800-64062400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:64059800-64062800	Weak transcription	Adipose Nuclei	Adipose
15	chr6:64060000-64061800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:64060000-64062000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:64060000-64062000	Weak transcription	HUVEC	blood vessel
18	chr6:64060000-64062200	Weak transcription	Fetal Intestine Small	intestine
19	chr6:64060000-64062200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:64060800-64064400	Enhancers	A549	lung
21	chr6:64061000-64062000	Enhancers	GM12878-XiMat	blood
22	chr6:64061200-64062200	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:64061200-64062400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:64061200-64062400	Weak transcription	Fetal Intestine Large	intestine
25	chr6:64061400-64062600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:64061600-64062000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:64061600-64062200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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