Variant report

Variant	rs1615068
Chromosome Location	chr6:64257976-64257977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64257894..64259576-chr6:64281719..64283676,2	MCF-7	breast:
2	chr6:64256356..64258485-chr6:64274264..64276297,2	K562	blood:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1197893	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1197894	1.00[AMR][1000 genomes]
rs1197895	1.00[AMR][1000 genomes]
rs1197896	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1212434	1.00[AMR][1000 genomes]
rs1212826	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1613731	1.00[AMR][1000 genomes]
rs1615595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1618240	1.00[AMR][1000 genomes]
rs1681943	1.00[AMR][1000 genomes]
rs1681961	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711905	1.00[AMR][1000 genomes]
rs1741791	1.00[AMR][1000 genomes]
rs1741795	1.00[AMR][1000 genomes]
rs1741796	1.00[AMR][1000 genomes]
rs1741798	1.00[AMR][1000 genomes]
rs1741803	1.00[AMR][1000 genomes]
rs1744130	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1744151	1.00[AMR][1000 genomes]
rs1744157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1744162	1.00[AMR][1000 genomes]
rs1779743	1.00[AMR][1000 genomes]
rs1779750	1.00[AMR][1000 genomes]
rs1779751	1.00[AMR][1000 genomes]
rs1779752	1.00[AMR][1000 genomes]
rs1779759	1.00[AMR][1000 genomes]
rs1779763	1.00[AMR][1000 genomes]
rs1905596	1.00[YRI][hapmap]
rs2348150	1.00[AMR][1000 genomes]
rs2622278	1.00[AMR][1000 genomes]
rs2622279	1.00[AMR][1000 genomes]
rs2622290	1.00[AMR][1000 genomes]
rs2622292	1.00[AMR][1000 genomes]
rs2622301	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622303	1.00[AMR][1000 genomes]
rs2622309	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622311	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2753063	1.00[AMR][1000 genomes]
rs2758239	1.00[AMR][1000 genomes]
rs2758243	1.00[AMR][1000 genomes]
rs2758249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800014	1.00[AMR][1000 genomes]
rs2800015	1.00[AMR][1000 genomes]
rs2800016	1.00[AMR][1000 genomes]
rs2800039	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800046	1.00[AMR][1000 genomes]
rs2800053	1.00[AMR][1000 genomes]
rs4470834	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9344332	1.00[AMR][1000 genomes]
rs9344340	1.00[AMR][1000 genomes]
rs9885808	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981154	chr6:64253950-64260109	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64249400-64258200	Weak transcription	Liver	Liver
2	chr6:64252800-64258800	Weak transcription	HepG2	liver
3	chr6:64255000-64263000	Weak transcription	Hela-S3	cervix
4	chr6:64255200-64258000	Weak transcription	A549	lung

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