Variant report

Variant	rs2622292
Chromosome Location	chr6:64163105-64163106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64162095..64163883-chr6:64281750..64283418,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1197893	1.00[AMR][1000 genomes]
rs1197894	1.00[AMR][1000 genomes]
rs1197895	1.00[AMR][1000 genomes]
rs1197896	1.00[AMR][1000 genomes]
rs1212434	1.00[AMR][1000 genomes]
rs1212826	1.00[AMR][1000 genomes]
rs1613731	1.00[AMR][1000 genomes]
rs1614337	1.00[AMR][1000 genomes]
rs1615068	1.00[AMR][1000 genomes]
rs1615595	1.00[AMR][1000 genomes]
rs1618240	1.00[AMR][1000 genomes]
rs1681943	1.00[AMR][1000 genomes]
rs1681961	1.00[AMR][1000 genomes]
rs1711895	1.00[AMR][1000 genomes]
rs1711905	1.00[AMR][1000 genomes]
rs1711921	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1723521	1.00[AMR][1000 genomes]
rs1741791	1.00[AMR][1000 genomes]
rs1741795	1.00[AMR][1000 genomes]
rs1741796	1.00[AMR][1000 genomes]
rs1741798	1.00[AMR][1000 genomes]
rs1741803	1.00[AMR][1000 genomes]
rs1744130	1.00[AMR][1000 genomes]
rs1744151	1.00[AMR][1000 genomes]
rs1744157	1.00[AMR][1000 genomes]
rs1744162	1.00[AMR][1000 genomes]
rs1779743	1.00[AMR][1000 genomes]
rs1779750	1.00[AMR][1000 genomes]
rs1779751	1.00[AMR][1000 genomes]
rs1779752	1.00[AMR][1000 genomes]
rs1779759	1.00[AMR][1000 genomes]
rs1779763	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1905596	1.00[YRI][hapmap]
rs2254662	1.00[AMR][1000 genomes]
rs2348150	1.00[AMR][1000 genomes]
rs2459568	1.00[AMR][1000 genomes]
rs2622278	1.00[AMR][1000 genomes]
rs2622279	1.00[AMR][1000 genomes]
rs2622290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622301	1.00[AMR][1000 genomes]
rs2622303	1.00[AMR][1000 genomes]
rs2622309	1.00[AMR][1000 genomes]
rs2622311	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2753063	1.00[AMR][1000 genomes]
rs2758239	1.00[AMR][1000 genomes]
rs2758243	1.00[AMR][1000 genomes]
rs2758249	1.00[AMR][1000 genomes]
rs2800014	1.00[AMR][1000 genomes]
rs2800015	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800039	1.00[AMR][1000 genomes]
rs2800046	1.00[AMR][1000 genomes]
rs2800053	1.00[AMR][1000 genomes]
rs4470834	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4710435	1.00[YRI][hapmap]
rs6929630	1.00[AMR][1000 genomes]
rs9341779	1.00[AMR][1000 genomes]
rs9344332	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9344340	1.00[AMR][1000 genomes]
rs9352740	1.00[AMR][1000 genomes]
rs9885808	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64158000-64168200	Enhancers	HepG2	liver
2	chr6:64158400-64168400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:64162200-64164000	Active TSS	Liver	Liver
4	chr6:64162400-64166400	Weak transcription	Pancreas	Pancrea
5	chr6:64162400-64166800	Weak transcription	Stomach Mucosa	stomach
6	chr6:64162600-64163400	Enhancers	Hela-S3	cervix
7	chr6:64162800-64164400	Enhancers	A549	lung
8	chr6:64162800-64167600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:64163000-64166400	Weak transcription	Fetal Intestine Large	intestine

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