Variant report

Variant	rs9344340
Chromosome Location	chr6:64342847-64342848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:64340888-64342956	K562	blood:	n/a	n/a
2	POLR2A	chr6:64342815-64342948	MCF10A-Er-Src	breast:	n/a	n/a
3	CTCF	chr6:64342740-64342890	SK-N-SH_RA	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:64292060..64293856-chr6:64342252..64344246,2	MCF-7	breast:
2	chr6:64280920..64286126-chr6:64341540..64349518,16	K562	blood:
3	chr6:64281350..64286126-chr6:64342580..64350015,13	K562	blood:

Variant related genes	Relation type
PHF3	TF binding region
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1197893	1.00[AMR][1000 genomes]
rs1197894	1.00[AMR][1000 genomes]
rs1197895	1.00[AMR][1000 genomes]
rs1197896	1.00[AMR][1000 genomes]
rs1212434	1.00[AMR][1000 genomes]
rs1212826	1.00[AMR][1000 genomes]
rs1615068	1.00[AMR][1000 genomes]
rs1615595	1.00[AMR][1000 genomes]
rs1618240	1.00[AMR][1000 genomes]
rs1681943	1.00[AMR][1000 genomes]
rs1681961	1.00[AMR][1000 genomes]
rs1741803	1.00[AMR][1000 genomes]
rs1744130	1.00[AMR][1000 genomes]
rs1744151	1.00[AMR][1000 genomes]
rs1744157	1.00[AMR][1000 genomes]
rs1744162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779743	1.00[AMR][1000 genomes]
rs1779750	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779751	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2348150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622278	1.00[AMR][1000 genomes]
rs2622279	1.00[AMR][1000 genomes]
rs2622290	1.00[AMR][1000 genomes]
rs2622292	1.00[AMR][1000 genomes]
rs2622301	1.00[AMR][1000 genomes]
rs2622303	1.00[AMR][1000 genomes]
rs2622309	1.00[AMR][1000 genomes]
rs2622311	1.00[AMR][1000 genomes]
rs2753063	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2758239	1.00[AMR][1000 genomes]
rs2758243	1.00[AMR][1000 genomes]
rs2758249	1.00[AMR][1000 genomes]
rs2800014	1.00[AMR][1000 genomes]
rs2800015	1.00[AMR][1000 genomes]
rs2800016	1.00[AMR][1000 genomes]
rs2800039	1.00[AMR][1000 genomes]
rs2800046	1.00[AMR][1000 genomes]
rs2800053	1.00[AMR][1000 genomes]
rs4470834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9344332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9885808	1.00[AMR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64341000-64344600	Weak transcription	Fetal Intestine Large	intestine
2	chr6:64341000-64344600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:64341000-64344800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:64341600-64344800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:64341800-64344600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:64342200-64343200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:64342400-64343000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:64342400-64343000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:64342400-64343000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr6:64342400-64343000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr6:64342400-64343000	Enhancers	Fetal Lung	lung
12	chr6:64342600-64343000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr6:64342600-64343000	Enhancers	K562	blood
14	chr6:64342600-64343200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
15	chr6:64342600-64344800	Enhancers	HepG2	liver
16	chr6:64342800-64343000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:64342800-64344600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links