Variant report

Variant	rs1779750
Chromosome Location	chr6:64144804-64144805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64144471..64145931-chr6:64200574..64201618,46	MCF-7	breast:
2	chr6:64144526..64145534-chr6:64200616..64201618,23	MCF-7	breast:
3	chr6:64144543..64145560-chr6:64200616..64201610,32	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1197893	1.00[AMR][1000 genomes]
rs1197894	1.00[AMR][1000 genomes]
rs1197895	1.00[AMR][1000 genomes]
rs1197896	1.00[AMR][1000 genomes]
rs1212434	1.00[AMR][1000 genomes]
rs1212826	1.00[AMR][1000 genomes]
rs1613731	1.00[AMR][1000 genomes]
rs1614337	1.00[AMR][1000 genomes]
rs1615068	1.00[AMR][1000 genomes]
rs1615595	1.00[AMR][1000 genomes]
rs1618240	1.00[AMR][1000 genomes]
rs1681943	1.00[AMR][1000 genomes]
rs1681961	1.00[AMR][1000 genomes]
rs1711895	1.00[AMR][1000 genomes]
rs1711905	1.00[AMR][1000 genomes]
rs1711921	1.00[AMR][1000 genomes]
rs1723521	1.00[AMR][1000 genomes]
rs1741791	1.00[AMR][1000 genomes]
rs1741795	1.00[AMR][1000 genomes]
rs1741796	1.00[AMR][1000 genomes]
rs1741798	1.00[AMR][1000 genomes]
rs1741803	1.00[AMR][1000 genomes]
rs1744130	1.00[AMR][1000 genomes]
rs1744151	1.00[AMR][1000 genomes]
rs1744157	1.00[AMR][1000 genomes]
rs1744162	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779743	1.00[AMR][1000 genomes]
rs1779751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779752	1.00[AMR][1000 genomes]
rs1779759	1.00[AMR][1000 genomes]
rs1779763	1.00[AMR][1000 genomes]
rs2254662	1.00[AMR][1000 genomes]
rs2348150	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2459568	1.00[AMR][1000 genomes]
rs2622278	1.00[AMR][1000 genomes]
rs2622279	1.00[AMR][1000 genomes]
rs2622290	1.00[AMR][1000 genomes]
rs2622292	1.00[AMR][1000 genomes]
rs2622301	1.00[AMR][1000 genomes]
rs2622303	1.00[AMR][1000 genomes]
rs2622309	1.00[AMR][1000 genomes]
rs2622311	1.00[AMR][1000 genomes]
rs2753063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2758239	1.00[AMR][1000 genomes]
rs2758243	1.00[AMR][1000 genomes]
rs2758249	1.00[AMR][1000 genomes]
rs2800014	1.00[AMR][1000 genomes]
rs2800015	1.00[AMR][1000 genomes]
rs2800016	1.00[AMR][1000 genomes]
rs2800039	1.00[AMR][1000 genomes]
rs2800046	1.00[AMR][1000 genomes]
rs2800053	1.00[AMR][1000 genomes]
rs4470834	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6929630	1.00[AMR][1000 genomes]
rs9341779	1.00[AMR][1000 genomes]
rs9344332	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9344340	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9352740	1.00[AMR][1000 genomes]
rs9885808	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64139800-64145200	Enhancers	HepG2	liver
2	chr6:64144600-64145200	Enhancers	Fetal Intestine Large	intestine
3	chr6:64144600-64145200	Enhancers	Hela-S3	cervix
4	chr6:64144600-64146600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:64144800-64145400	Enhancers	A549	lung

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