Variant report

Variant	rs2254662
Chromosome Location	chr6:64008124-64008125
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1613731	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1614337	1.00[AMR][1000 genomes]
rs1616743	0.88[AFR][1000 genomes]
rs1681961	1.00[AMR][1000 genomes]
rs1711895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711905	1.00[AMR][1000 genomes]
rs1711908	0.87[AFR][1000 genomes]
rs1711921	1.00[AMR][1000 genomes]
rs1723521	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741791	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1741795	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741796	1.00[AMR][1000 genomes]
rs1741798	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741803	1.00[AMR][1000 genomes]
rs1744130	1.00[AMR][1000 genomes]
rs1779743	1.00[AMR][1000 genomes]
rs1779750	1.00[AMR][1000 genomes]
rs1779751	1.00[AMR][1000 genomes]
rs1779752	1.00[AMR][1000 genomes]
rs1779759	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779763	1.00[AMR][1000 genomes]
rs2219528	1.00[AMR][1000 genomes]
rs2459568	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622278	1.00[AMR][1000 genomes]
rs2622279	1.00[AMR][1000 genomes]
rs2622290	1.00[AMR][1000 genomes]
rs2622292	1.00[AMR][1000 genomes]
rs2622301	1.00[AMR][1000 genomes]
rs2753063	1.00[AMR][1000 genomes]
rs2800014	1.00[AMR][1000 genomes]
rs2800015	1.00[AMR][1000 genomes]
rs2800016	1.00[AMR][1000 genomes]
rs2800046	1.00[AMR][1000 genomes]
rs2800053	1.00[AMR][1000 genomes]
rs4280947	1.00[AMR][1000 genomes]
rs6929630	1.00[AMR][1000 genomes]
rs7768450	1.00[AMR][1000 genomes]
rs9341779	1.00[AMR][1000 genomes]
rs9352678	1.00[AMR][1000 genomes]
rs9352740	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63985200-64014200	Weak transcription	A549	lung
2	chr6:64006800-64009000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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