Variant report

Variant	rs1741798
Chromosome Location	chr6:64063840-64063841
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64061851..64067000-chr6:64282014..64286349,7	MCF-7	breast:
2	chr6:64059286..64067591-chr6:64279675..64285580,14	MCF-7	breast:
3	chr6:64062103..64065068-chr6:64510364..64512443,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1197893	1.00[AMR][1000 genomes]
rs1197894	1.00[AMR][1000 genomes]
rs1197895	1.00[AMR][1000 genomes]
rs1197896	1.00[AMR][1000 genomes]
rs1212826	1.00[AMR][1000 genomes]
rs1613731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1614337	1.00[AMR][1000 genomes]
rs1615068	1.00[AMR][1000 genomes]
rs1615595	1.00[AMR][1000 genomes]
rs1616743	0.87[AFR][1000 genomes]
rs1618240	1.00[AMR][1000 genomes]
rs1681943	1.00[AMR][1000 genomes]
rs1681961	1.00[AMR][1000 genomes]
rs1711895	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711905	1.00[AMR][1000 genomes]
rs1711908	1.00[AFR][1000 genomes]
rs1711921	1.00[AMR][1000 genomes]
rs1723521	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741791	1.00[AMR][1000 genomes]
rs1741795	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1741796	1.00[AMR][1000 genomes]
rs1741803	1.00[AMR][1000 genomes]
rs1744130	1.00[AMR][1000 genomes]
rs1744151	1.00[AMR][1000 genomes]
rs1744157	1.00[AMR][1000 genomes]
rs1744162	1.00[AMR][1000 genomes]
rs1779743	1.00[AMR][1000 genomes]
rs1779750	1.00[AMR][1000 genomes]
rs1779751	1.00[AMR][1000 genomes]
rs1779752	1.00[AMR][1000 genomes]
rs1779759	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779763	1.00[AMR][1000 genomes]
rs2219528	1.00[AMR][1000 genomes]
rs2254662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2459568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622278	1.00[AMR][1000 genomes]
rs2622279	1.00[AMR][1000 genomes]
rs2622290	1.00[AMR][1000 genomes]
rs2622292	1.00[AMR][1000 genomes]
rs2622301	1.00[AMR][1000 genomes]
rs2622303	1.00[AMR][1000 genomes]
rs2622309	1.00[AMR][1000 genomes]
rs2622311	1.00[AMR][1000 genomes]
rs2753063	1.00[AMR][1000 genomes]
rs2758239	1.00[AMR][1000 genomes]
rs2758243	1.00[AMR][1000 genomes]
rs2758249	1.00[AMR][1000 genomes]
rs2800014	1.00[AMR][1000 genomes]
rs2800015	1.00[AMR][1000 genomes]
rs2800016	1.00[AMR][1000 genomes]
rs2800039	1.00[AMR][1000 genomes]
rs2800046	1.00[AMR][1000 genomes]
rs2800053	1.00[AMR][1000 genomes]
rs4280947	1.00[AMR][1000 genomes]
rs6929630	1.00[AMR][1000 genomes]
rs7768450	1.00[AMR][1000 genomes]
rs9341779	1.00[AMR][1000 genomes]
rs9352678	1.00[AMR][1000 genomes]
rs9352740	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64040400-64071200	Weak transcription	Placenta	Placenta
2	chr6:64060800-64064400	Enhancers	A549	lung
3	chr6:64062000-64064200	Enhancers	HepG2	liver
4	chr6:64062600-64071200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:64063000-64064400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:64063200-64064000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:64063200-64064200	Enhancers	Liver	Liver
8	chr6:64063400-64064200	Enhancers	GM12878-XiMat	blood
9	chr6:64063400-64064200	Enhancers	Hela-S3	cervix
10	chr6:64063400-64065400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:64063800-64065400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:64063800-64065600	Weak transcription	Monocytes-CD14+_RO01746	blood

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