The 2.0 version of rSNPBase

Variant report

Variant rs1744162
Chromosome Location chr6:64287829-64287830
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:64284000-64294000 Weak transcription Spleen Spleen
2 chr6:64284000-64297200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr6:64284200-64289400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr6:64284200-64294200 Weak transcription Gastric stomach
5 chr6:64284200-64294400 Weak transcription Lung lung
6 chr6:64284400-64289400 Weak transcription Fetal Muscle Leg muscle
7 chr6:64284400-64289600 Weak transcription Esophagus oesophagus
8 chr6:64284400-64292600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr6:64284400-64294400 Weak transcription Aorta Aorta
10 chr6:64284400-64296200 Weak transcription Ovary ovary
11 chr6:64284600-64289600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr6:64284600-64289600 Weak transcription Thymus Thymus
13 chr6:64284600-64292000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr6:64284600-64294800 Weak transcription Right Ventricle heart
15 chr6:64284800-64307600 Weak transcription Fetal Stomach stomach
16 chr6:64285000-64289200 Weak transcription Brain Cingulate Gyrus brain
17 chr6:64285000-64294800 Weak transcription Stomach Mucosa stomach
18 chr6:64285400-64289600 Weak transcription Brain Angular Gyrus brain
19 chr6:64285400-64289600 Weak transcription Rectal Smooth Muscle rectum
20 chr6:64285400-64293600 Weak transcription Fetal Heart heart
21 chr6:64285400-64294600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr6:64285600-64291600 Strong transcription iPS-18 Cell Line embryonic stem cell
23 chr6:64285600-64292800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr6:64285600-64295800 Weak transcription Fetal Intestine Small intestine
25 chr6:64285800-64293000 Strong transcription HUES64 Cell Line embryonic stem cell
26 chr6:64286000-64292800 Strong transcription iPS-20b Cell Line embryonic stem cell
27 chr6:64286200-64288000 Genic enhancers Fetal Intestine Large intestine
28 chr6:64286200-64288400 Genic enhancers Primary T helper cells PMA-I stimulated --
29 chr6:64286200-64290400 Strong transcription H9 Cell Line embryonic stem cell
30 chr6:64286200-64290600 Strong transcription iPS-15b Cell Line embryonic stem cell
31 chr6:64286200-64290600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr6:64286200-64290600 Strong transcription K562 blood
33 chr6:64286200-64290800 Strong transcription Primary hematopoietic stem cells blood
34 chr6:64286200-64291400 Strong transcription H1 Cell Line embryonic stem cell
35 chr6:64286200-64291400 Strong transcription Primary hematopoietic stem cells short term culture blood
36 chr6:64286200-64291800 Strong transcription Cortex derived primary cultured neurospheres brain
37 chr6:64286200-64292200 Strong transcription HUES6 Cell Line embryonic stem cell
38 chr6:64286200-64292800 Strong transcription HUES48 Cell Line embryonic stem cell
39 chr6:64286200-64292800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr6:64286200-64292800 Strong transcription Primary monocytes fromperipheralblood blood
41 chr6:64286200-64292800 Strong transcription HUVEC blood vessel
42 chr6:64286200-64293000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr6:64286200-64293000 Strong transcription Primary T helper cells fromperipheralblood blood
44 chr6:64286200-64293000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr6:64286200-64293000 Strong transcription Fetal Thymus thymus
46 chr6:64286200-64293800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr6:64286200-64294000 Strong transcription Primary B cells from cord blood blood
48 chr6:64286200-64294000 Strong transcription Monocytes-CD14+_RO01746 blood
49 chr6:64286200-64294400 Strong transcription HSMM muscle
50 chr6:64286400-64288200 Transcr. at gene 5' and 3' Hela-S3 cervix

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Last update: Aug 31, 2015