Variant report

Variant	rs7867017
Chromosome Location	chr9:116136636-116136637
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116111775..116114155-chr9:116135135..116137123,3	MCF-7	breast:
2	chr9:116127286..116129224-chr9:116135348..116138252,2	K562	blood:
3	chr9:116129674..116142040-chr9:116159218..116175468,34	MCF-7	breast:
4	chr9:116101733..116104316-chr9:116133698..116137362,3	K562	blood:
5	chr9:116135343..116137901-chr9:116159656..116162633,2	K562	blood:
6	chr9:116070123..116071918-chr9:116134499..116138293,3	MCF-7	breast:
7	chr9:116135295..116143276-chr9:116169551..116176415,12	MCF-7	breast:
8	chr9:116133150..116137640-chr9:116162561..116165581,6	MCF-7	breast:
9	chr9:116122073..116125346-chr9:116133766..116136866,3	MCF-7	breast:
10	chr9:116108846..116117047-chr9:116126327..116140994,30	MCF-7	breast:
11	chr9:116129961..116132443-chr9:116136297..116137868,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000148229	Chromatin interaction
ENSG00000119411	Chromatin interaction
ENSG00000157653	Chromatin interaction
ENSG00000148225	Chromatin interaction
ENSG00000148218	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs60969910	1.00[EUR][1000 genomes]
rs6478021	1.00[EUR][1000 genomes]
rs7023224	1.00[EUR][1000 genomes]
rs7033489	1.00[EUR][1000 genomes]
rs7038258	1.00[EUR][1000 genomes]
rs7042609	1.00[EUR][1000 genomes]
rs73538901	1.00[EUR][1000 genomes]
rs7851265	1.00[EUR][1000 genomes]
rs7853612	1.00[EUR][1000 genomes]
rs7856713	1.00[EUR][1000 genomes]
rs7864169	1.00[EUR][1000 genomes]
rs7865642	1.00[EUR][1000 genomes]
rs7866866	1.00[EUR][1000 genomes]
rs7870008	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv519849	chr9:116111407-116144973	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1036586	chr9:116118902-116136993	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv615214	chr9:116125789-116149967	Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116113000-116138000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:116113800-116137800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:116116400-116137000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:116123600-116138200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:116125000-116138000	Weak transcription	Fetal Kidney	kidney
6	chr9:116127800-116160400	Weak transcription	Fetal Heart	heart
7	chr9:116128200-116137200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:116128800-116137600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:116129200-116137600	Weak transcription	Hela-S3	cervix
10	chr9:116132000-116138600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:116132200-116138600	Weak transcription	HSMMtube	muscle
12	chr9:116132600-116137600	Weak transcription	K562	blood
13	chr9:116132600-116137800	Weak transcription	Right Atrium	heart
14	chr9:116132800-116137600	Strong transcription	Fetal Stomach	stomach
15	chr9:116133200-116138600	Weak transcription	Fetal Lung	lung
16	chr9:116133600-116137400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:116134200-116137000	Strong transcription	Thymus	Thymus
18	chr9:116134200-116137800	Weak transcription	Osteobl	bone
19	chr9:116134400-116137400	Strong transcription	Placenta	Placenta
20	chr9:116134400-116138600	Weak transcription	HUVEC	blood vessel
21	chr9:116134600-116138600	Weak transcription	Fetal Brain Male	brain
22	chr9:116134800-116137000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:116134800-116137000	Strong transcription	Rectal Smooth Muscle	rectum
24	chr9:116134800-116137000	Genic enhancers	GM12878-XiMat	blood
25	chr9:116134800-116137800	Strong transcription	Primary T cells from cord blood	blood
26	chr9:116134800-116138800	Weak transcription	Small Intestine	intestine
27	chr9:116135000-116136800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:116135000-116136800	Strong transcription	Ovary	ovary
29	chr9:116135000-116137000	Strong transcription	Brain Cingulate Gyrus	brain
30	chr9:116135000-116137200	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr9:116135000-116137400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:116135000-116137400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:116135000-116137400	Genic enhancers	Liver	Liver
34	chr9:116135000-116137400	Genic enhancers	Pancreas	Pancrea
35	chr9:116135000-116137400	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr9:116135000-116137600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:116135000-116137600	Strong transcription	Left Ventricle	heart
38	chr9:116135000-116137600	Strong transcription	Lung	lung
39	chr9:116135000-116137600	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:116135000-116137600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr9:116135000-116137600	Genic enhancers	HepG2	liver
42	chr9:116135000-116137600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr9:116135000-116137800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:116135000-116137800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr9:116135000-116137800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:116135000-116137800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:116135200-116136800	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr9:116135200-116136800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:116135200-116136800	Strong transcription	Adipose Nuclei	Adipose
50	chr9:116135200-116137000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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