Variant report

Variant	rs7866866
Chromosome Location	chr9:116248062-116248063
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116244673..116249213-chr9:116254294..116256965,4	K562	blood:
2	chr9:116240264..116245059-chr9:116245363..116250466,7	MCF-7	breast:
3	chr9:116242234..116244423-chr9:116246310..116248311,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138835	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10981835	0.84[LWK][hapmap];0.87[YRI][hapmap]
rs12339493	1.00[CHB][hapmap]
rs12346476	1.00[EUR][1000 genomes]
rs60969910	1.00[EUR][1000 genomes]
rs6478021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7023224	1.00[EUR][1000 genomes]
rs7027261	1.00[EUR][1000 genomes]
rs7032245	1.00[EUR][1000 genomes]
rs7032414	1.00[EUR][1000 genomes]
rs7033489	1.00[EUR][1000 genomes]
rs7038258	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7042609	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73538901	1.00[EUR][1000 genomes]
rs73544687	1.00[EUR][1000 genomes]
rs73544688	1.00[EUR][1000 genomes]
rs785101	1.00[CHB][hapmap]
rs7851265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7853612	1.00[EUR][1000 genomes]
rs7856713	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7864169	1.00[EUR][1000 genomes]
rs7865642	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867017	1.00[EUR][1000 genomes]
rs7870008	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116227400-116263800	Weak transcription	Colonic Mucosa	Colon
2	chr9:116231600-116249800	Weak transcription	Hela-S3	cervix
3	chr9:116235000-116251200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:116236200-116252400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:116239200-116250200	Weak transcription	Psoas Muscle	Psoas
6	chr9:116240400-116254600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:116241200-116252800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:116241800-116248800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:116241800-116252200	Strong transcription	Fetal Intestine Small	intestine
10	chr9:116242000-116254200	Weak transcription	Brain Germinal Matrix	brain
11	chr9:116242000-116254200	Weak transcription	Fetal Thymus	thymus
12	chr9:116242000-116255200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:116242000-116263600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:116242000-116266200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:116242600-116254200	Weak transcription	Fetal Brain Female	brain
16	chr9:116244000-116249600	Weak transcription	Liver	Liver
17	chr9:116244800-116248400	Enhancers	Fetal Heart	heart
18	chr9:116245000-116248800	Enhancers	Colon Smooth Muscle	Colon
19	chr9:116245000-116249000	Strong transcription	Fetal Intestine Large	intestine
20	chr9:116245800-116248400	Enhancers	HUVEC	blood vessel
21	chr9:116245800-116248800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:116245800-116248800	Enhancers	Right Ventricle	heart
23	chr9:116245800-116248800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr9:116246000-116248600	Enhancers	NHLF	lung
25	chr9:116246400-116250400	Weak transcription	Lung	lung
26	chr9:116246600-116248200	Enhancers	HSMMtube	muscle
27	chr9:116246600-116248400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:116246600-116248400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:116246600-116248400	Enhancers	HSMM	muscle
30	chr9:116246600-116248800	Enhancers	NH-A	brain
31	chr9:116246600-116248800	Enhancers	Osteobl	bone
32	chr9:116246600-116250600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:116246600-116254400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:116246800-116251800	Strong transcription	HepG2	liver
35	chr9:116246800-116254800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr9:116247000-116248200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:116247000-116248600	Weak transcription	Pancreas	Pancrea
38	chr9:116247000-116253600	Weak transcription	Fetal Muscle Leg	muscle
39	chr9:116247000-116254600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:116247000-116254800	Weak transcription	Stomach Mucosa	stomach
41	chr9:116247200-116248400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:116247200-116248800	Enhancers	NHDF-Ad	bronchial
43	chr9:116247200-116254600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr9:116247400-116248800	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr9:116247600-116248800	Enhancers	Ovary	ovary
46	chr9:116247600-116249200	Strong transcription	A549	lung
47	chr9:116247800-116248200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:116247800-116248200	Enhancers	Placenta	Placenta
49	chr9:116247800-116248200	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr9:116247800-116248200	Enhancers	HMEC	breast

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