Variant report

Variant	rs73538901
Chromosome Location	chr9:116364509-116364510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116357889..116361731-chr9:116362609..116366505,5	MCF-7	breast:
2	chr9:116343200..116345201-chr9:116363106..116364913,2	MCF-7	breast:
3	chr9:116364314..116366664-chr9:116377313..116378930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138835	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12346476	1.00[EUR][1000 genomes]
rs16908653	1.00[EUR][1000 genomes]
rs6478021	1.00[EUR][1000 genomes]
rs7023224	1.00[EUR][1000 genomes]
rs7027261	1.00[EUR][1000 genomes]
rs7032245	1.00[EUR][1000 genomes]
rs7032414	1.00[EUR][1000 genomes]
rs7033489	1.00[EUR][1000 genomes]
rs7038258	1.00[EUR][1000 genomes]
rs7042609	1.00[EUR][1000 genomes]
rs73544687	1.00[EUR][1000 genomes]
rs73544688	1.00[EUR][1000 genomes]
rs73548441	1.00[EUR][1000 genomes]
rs73655894	1.00[EUR][1000 genomes]
rs7851265	1.00[EUR][1000 genomes]
rs7853612	1.00[EUR][1000 genomes]
rs7856713	1.00[EUR][1000 genomes]
rs7864169	1.00[EUR][1000 genomes]
rs7865642	1.00[EUR][1000 genomes]
rs7866866	1.00[EUR][1000 genomes]
rs7867017	1.00[EUR][1000 genomes]
rs7870008	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
6	nsv466509	chr9:116356516-116396098	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv615216	chr9:116356516-116396098	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv466510	chr9:116363877-116397397	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv615217	chr9:116363877-116397397	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116357400-116364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:116357400-116364800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:116358000-116371800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:116360200-116365400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr9:116360200-116366400	Enhancers	Placenta	Placenta
6	chr9:116360400-116364600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:116360400-116364600	Weak transcription	Fetal Brain Female	brain
8	chr9:116360400-116371800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:116360600-116365800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:116360600-116366000	Enhancers	Right Ventricle	heart
11	chr9:116360800-116366000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:116360800-116366000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:116360800-116366000	Enhancers	NHDF-Ad	bronchial
14	chr9:116360800-116366600	Enhancers	Liver	Liver
15	chr9:116361000-116364600	Weak transcription	Brain Germinal Matrix	brain
16	chr9:116361000-116364600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr9:116361000-116365600	Enhancers	Left Ventricle	heart
18	chr9:116361000-116366400	Enhancers	Fetal Muscle Leg	muscle
19	chr9:116361200-116365600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:116361200-116365800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:116361200-116366600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:116361400-116366000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:116361400-116366000	Enhancers	Fetal Lung	lung
24	chr9:116361400-116367000	Enhancers	Adipose Nuclei	Adipose
25	chr9:116361600-116364800	Enhancers	Spleen	Spleen
26	chr9:116361600-116365000	Enhancers	HSMM	muscle
27	chr9:116361600-116365600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:116361800-116365000	Enhancers	HUVEC	blood vessel
29	chr9:116361800-116365200	Enhancers	HSMMtube	muscle
30	chr9:116362000-116366000	Enhancers	HMEC	breast
31	chr9:116362000-116366600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr9:116362200-116365800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:116362400-116364600	Weak transcription	Fetal Brain Male	brain
34	chr9:116362400-116364800	Enhancers	Brain Anterior Caudate	brain
35	chr9:116362400-116365400	Enhancers	Osteobl	bone
36	chr9:116362400-116365600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:116362400-116366000	Enhancers	Fetal Muscle Trunk	muscle
38	chr9:116362400-116366400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:116362600-116364600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr9:116362600-116365200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr9:116362600-116365600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr9:116362800-116365000	Enhancers	Lung	lung
43	chr9:116362800-116365200	Enhancers	Ovary	ovary
44	chr9:116363000-116365600	Enhancers	NH-A	brain
45	chr9:116363000-116365800	Enhancers	Fetal Stomach	stomach
46	chr9:116363000-116366800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr9:116363400-116364600	Weak transcription	Psoas Muscle	Psoas
48	chr9:116363400-116365400	Enhancers	Brain Hippocampus Middle	brain
49	chr9:116363400-116366000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:116363600-116364800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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