Variant report

Variant	rs73548441
Chromosome Location	chr9:116501436-116501437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12346476	1.00[EUR][1000 genomes]
rs16908653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16909502	1.00[EUR][1000 genomes]
rs6478021	1.00[EUR][1000 genomes]
rs7027261	1.00[EUR][1000 genomes]
rs7032245	1.00[EUR][1000 genomes]
rs7032414	1.00[EUR][1000 genomes]
rs7033489	1.00[EUR][1000 genomes]
rs73538901	1.00[EUR][1000 genomes]
rs73544687	1.00[EUR][1000 genomes]
rs73544688	1.00[EUR][1000 genomes]
rs73655894	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116497800-116501800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116499400-116504800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:116500000-116501800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr9:116500400-116502800	Weak transcription	HMEC	breast
5	chr9:116501000-116504800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:116501200-116501600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:116501200-116502000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:116501200-116504800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:116501400-116505000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links