Variant report

Variant	rs7032245
Chromosome Location	chr9:116384786-116384787
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116383635..116386801-chr9:116393462..116397071,5	MCF-7	breast:
2	chr9:116382263..116386126-chr9:116386783..116389124,3	MCF-7	breast:
3	chr9:116383167..116386391-chr9:116389906..116398638,8	MCF-7	breast:
4	chr9:116362421..116364215-chr9:116382528..116385259,2	MCF-7	breast:
5	chr9:116384013..116386920-chr9:116410896..116413460,2	MCF-7	breast:
6	chr9:116378512..116381632-chr9:116384610..116387755,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RGS3-1	chr9:116382056-116384914	ENSG00000233817

No data

Variant related genes	Relation type
ENSG00000233817	Chromatin interaction
ENSG00000227482	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12346476	1.00[EUR][1000 genomes]
rs16908653	1.00[EUR][1000 genomes]
rs16909502	1.00[EUR][1000 genomes]
rs6478021	1.00[EUR][1000 genomes]
rs7023224	1.00[EUR][1000 genomes]
rs7027261	1.00[EUR][1000 genomes]
rs7032414	1.00[EUR][1000 genomes]
rs7033489	1.00[EUR][1000 genomes]
rs7038258	1.00[EUR][1000 genomes]
rs7042609	1.00[EUR][1000 genomes]
rs73538901	1.00[EUR][1000 genomes]
rs73544687	1.00[EUR][1000 genomes]
rs73544688	1.00[EUR][1000 genomes]
rs73548441	1.00[EUR][1000 genomes]
rs73655894	1.00[EUR][1000 genomes]
rs7851265	1.00[EUR][1000 genomes]
rs7853612	1.00[EUR][1000 genomes]
rs7856713	1.00[EUR][1000 genomes]
rs7864169	1.00[EUR][1000 genomes]
rs7865642	1.00[EUR][1000 genomes]
rs7866866	1.00[EUR][1000 genomes]
rs7870008	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
6	nsv466509	chr9:116356516-116396098	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv615216	chr9:116356516-116396098	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv466510	chr9:116363877-116397397	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv615217	chr9:116363877-116397397	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv615218	chr9:116365126-116391069	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv466511	chr9:116374990-116397397	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv615219	chr9:116374990-116397397	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv893749	chr9:116378759-116439749	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116376200-116386000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:116381200-116385800	Enhancers	Stomach Mucosa	stomach
3	chr9:116381200-116386000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:116381600-116386000	Enhancers	Fetal Intestine Small	intestine
5	chr9:116381800-116386000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:116381800-116386000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:116381800-116386600	Enhancers	NHLF	lung
8	chr9:116381800-116387200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:116382000-116384800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:116382000-116386600	Enhancers	Fetal Intestine Large	intestine
11	chr9:116382200-116384800	Weak transcription	Primary B cells from cord blood	blood
12	chr9:116382200-116385600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:116382200-116385800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr9:116382200-116386000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:116382200-116386200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr9:116382200-116386400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:116382400-116385000	Flanking Active TSS	NHDF-Ad	bronchial
18	chr9:116382400-116385400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:116382400-116386000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:116382400-116386400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:116382600-116385000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr9:116382600-116387800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:116382800-116384800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr9:116382800-116384800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr9:116382800-116385200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr9:116382800-116386000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr9:116382800-116386000	Enhancers	HMEC	breast
28	chr9:116382800-116387400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:116383000-116387200	Enhancers	Fetal Heart	heart
30	chr9:116383200-116385000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr9:116383200-116385400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr9:116383200-116386000	Enhancers	NHEK	skin
33	chr9:116383200-116386600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:116383400-116384800	Enhancers	HepG2	liver
35	chr9:116383400-116385200	Enhancers	Rectal Smooth Muscle	rectum
36	chr9:116383600-116384800	Enhancers	Adipose Nuclei	Adipose
37	chr9:116383600-116384800	Weak transcription	Hela-S3	cervix
38	chr9:116383600-116385000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr9:116383600-116385000	Enhancers	A549	lung
40	chr9:116383600-116385400	Weak transcription	Lung	lung
41	chr9:116383600-116385800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:116383600-116386000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:116383600-116387600	Weak transcription	Aorta	Aorta
44	chr9:116383600-116387800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:116383600-116389800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:116383800-116385200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr9:116383800-116385400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:116383800-116387400	Weak transcription	Psoas Muscle	Psoas
49	chr9:116383800-116389000	Weak transcription	Right Atrium	heart
50	chr9:116384000-116385400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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