Variant report

Variant	rs7851265
Chromosome Location	chr9:116303947-116303948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116292438..116296371-chr9:116301107..116304179,5	MCF-7	breast:
2	chr9:116303436..116305415-chr9:116335297..116337223,2	MCF-7	breast:
3	chr9:116301885..116305210-chr9:116340890..116344493,4	MCF-7	breast:
4	chr9:116301311..116304272-chr9:116334928..116337011,2	K562	blood:
5	chr9:116299205..116302813-chr9:116303300..116305128,3	K562	blood:
6	chr9:116303303..116304920-chr9:116309668..116311457,2	MCF-7	breast:
7	chr9:116302074..116305216-chr9:116309101..116311289,3	MCF-7	breast:
8	chr9:116283823..116285851-chr9:116302010..116304972,2	MCF-7	breast:
9	chr9:116302562..116304831-chr9:116305585..116308293,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138835	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12346476	1.00[EUR][1000 genomes]
rs60969910	1.00[EUR][1000 genomes]
rs6478021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7023224	1.00[EUR][1000 genomes]
rs7027261	1.00[EUR][1000 genomes]
rs7032245	1.00[EUR][1000 genomes]
rs7032414	1.00[EUR][1000 genomes]
rs7033489	1.00[EUR][1000 genomes]
rs7038258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7042609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73538901	1.00[EUR][1000 genomes]
rs73544687	1.00[EUR][1000 genomes]
rs73544688	1.00[EUR][1000 genomes]
rs7853612	1.00[EUR][1000 genomes]
rs7856713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7864169	1.00[EUR][1000 genomes]
rs7865642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7866866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867017	1.00[EUR][1000 genomes]
rs7870008	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116287000-116311600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr9:116287400-116306600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:116287400-116309200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:116288000-116308600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:116288800-116308200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr9:116288800-116308200	Strong transcription	HUVEC	blood vessel
7	chr9:116289000-116306600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr9:116289000-116308400	Strong transcription	GM12878-XiMat	blood
9	chr9:116289600-116310000	Weak transcription	Fetal Kidney	kidney
10	chr9:116291000-116310600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:116291600-116310400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:116295800-116306000	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chr9:116296200-116307000	Strong transcription	HepG2	liver
14	chr9:116296600-116304000	Weak transcription	Small Intestine	intestine
15	chr9:116297400-116306600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:116297600-116308400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:116297800-116306200	Enhancers	Fetal Heart	heart
18	chr9:116297800-116306600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:116298200-116306400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:116298400-116309400	Strong transcription	Primary T cells from cord blood	blood
21	chr9:116298600-116304400	Strong transcription	Liver	Liver
22	chr9:116298800-116310600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:116299000-116304800	Strong transcription	Fetal Intestine Small	intestine
24	chr9:116299000-116310800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr9:116299200-116305400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:116299200-116307400	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:116299400-116310600	Weak transcription	Thymus	Thymus
28	chr9:116299600-116308800	Weak transcription	Psoas Muscle	Psoas
29	chr9:116299600-116309200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr9:116299600-116310600	Weak transcription	NHLF	lung
31	chr9:116300200-116305600	Weak transcription	Brain Germinal Matrix	brain
32	chr9:116300200-116307200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
33	chr9:116300400-116307800	Weak transcription	Dnd41	blood
34	chr9:116300600-116305200	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr9:116300600-116305600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:116301200-116304400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:116301600-116304400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr9:116301600-116309200	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr9:116302200-116308400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr9:116302600-116304200	Enhancers	Placenta	Placenta
41	chr9:116302600-116304200	Strong transcription	Rectal Smooth Muscle	rectum
42	chr9:116302600-116304600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr9:116302600-116305600	Enhancers	Right Atrium	heart
44	chr9:116302600-116306400	Genic enhancers	Left Ventricle	heart
45	chr9:116302800-116304000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:116302800-116304000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr9:116302800-116304000	Genic enhancers	Fetal Intestine Large	intestine
48	chr9:116302800-116304000	Genic enhancers	Fetal Muscle Leg	muscle
49	chr9:116302800-116304000	Genic enhancers	Fetal Stomach	stomach
50	chr9:116302800-116304000	Genic enhancers	Stomach Smooth Muscle	stomach

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