Variant report

Variant	rs73544687
Chromosome Location	chr9:116439669-116439670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116171531..116174199-chr9:116438647..116441604,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157653	Chromatin interaction
ENSG00000148229	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12346476	1.00[EUR][1000 genomes]
rs16908653	1.00[EUR][1000 genomes]
rs16909502	1.00[EUR][1000 genomes]
rs6478021	1.00[EUR][1000 genomes]
rs7023224	1.00[EUR][1000 genomes]
rs7027261	1.00[EUR][1000 genomes]
rs7032245	1.00[EUR][1000 genomes]
rs7032414	1.00[EUR][1000 genomes]
rs7033489	1.00[EUR][1000 genomes]
rs7038258	1.00[EUR][1000 genomes]
rs7042609	1.00[EUR][1000 genomes]
rs73538901	1.00[EUR][1000 genomes]
rs73544688	1.00[EUR][1000 genomes]
rs73548441	1.00[EUR][1000 genomes]
rs73655894	1.00[EUR][1000 genomes]
rs7851265	1.00[EUR][1000 genomes]
rs7856713	1.00[EUR][1000 genomes]
rs7864169	1.00[EUR][1000 genomes]
rs7865642	1.00[EUR][1000 genomes]
rs7866866	1.00[EUR][1000 genomes]
rs7870008	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv893749	chr9:116378759-116439749	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv466512	chr9:116413751-116446881	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv615220	chr9:116413751-116446881	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116432400-116444000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:116434400-116439800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:116435600-116439800	Enhancers	NHDF-Ad	bronchial
4	chr9:116435800-116439800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:116435800-116439800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:116435800-116439800	Enhancers	HSMM	muscle
7	chr9:116436000-116439800	Enhancers	HSMMtube	muscle
8	chr9:116437400-116439800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:116438000-116439800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:116438200-116439800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:116438400-116441000	Weak transcription	Right Ventricle	heart
12	chr9:116438400-116444800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:116438800-116439800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr9:116439000-116439800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:116439000-116439800	Enhancers	Lung	lung
16	chr9:116439200-116439800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
17	chr9:116439200-116439800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:116439200-116439800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:116439400-116439800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:116439400-116439800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:116439400-116439800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:116439400-116444600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:116439600-116442000	Weak transcription	HUVEC	blood vessel
24	chr9:116439600-116442600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:116439600-116444200	Weak transcription	NHLF	lung
26	chr9:116439600-116444800	Weak transcription	NH-A	brain

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