Variant report

Variant	rs7033489
Chromosome Location	chr9:116337610-116337611
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116336122..116337944-chr9:116339964..116342896,2	MCF-7	breast:
2	chr9:116325194..116328078-chr9:116337432..116338965,2	K562	blood:

Variant related genes	Relation type
ENSG00000138835	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12346476	1.00[EUR][1000 genomes]
rs16908653	1.00[EUR][1000 genomes]
rs60969910	1.00[EUR][1000 genomes]
rs62619247	1.00[AMR][1000 genomes]
rs6478021	1.00[EUR][1000 genomes]
rs7023224	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7032245	1.00[EUR][1000 genomes]
rs7032414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7038258	1.00[EUR][1000 genomes]
rs7042609	1.00[EUR][1000 genomes]
rs73538901	1.00[EUR][1000 genomes]
rs73544687	1.00[EUR][1000 genomes]
rs73544688	1.00[EUR][1000 genomes]
rs73548441	1.00[EUR][1000 genomes]
rs73655894	1.00[EUR][1000 genomes]
rs7851265	1.00[EUR][1000 genomes]
rs7853612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7856713	1.00[EUR][1000 genomes]
rs7864169	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7865642	1.00[EUR][1000 genomes]
rs7866866	1.00[EUR][1000 genomes]
rs7867017	1.00[EUR][1000 genomes]
rs7870008	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116323200-116339000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:116323400-116339400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:116325800-116339800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:116326200-116339600	Weak transcription	HUVEC	blood vessel
5	chr9:116328400-116339800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:116328600-116339600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:116329000-116339800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:116329200-116339800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:116329200-116341600	Weak transcription	Fetal Intestine Large	intestine
10	chr9:116329400-116340800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:116331800-116340600	Weak transcription	Small Intestine	intestine
12	chr9:116332000-116340400	Weak transcription	Fetal Lung	lung
13	chr9:116332400-116339800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:116332600-116338400	Enhancers	HMEC	breast
15	chr9:116333400-116340000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:116334000-116339800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:116334200-116337800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr9:116334200-116338000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:116334200-116338000	Enhancers	Left Ventricle	heart
20	chr9:116334200-116338000	Enhancers	Right Atrium	heart
21	chr9:116334200-116338000	Enhancers	Right Ventricle	heart
22	chr9:116334200-116338200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr9:116334400-116338200	Enhancers	Brain Hippocampus Middle	brain
24	chr9:116334600-116337800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:116334600-116338000	Enhancers	Spleen	Spleen
26	chr9:116334800-116338000	Strong transcription	Fetal Stomach	stomach
27	chr9:116335000-116344000	Weak transcription	Ovary	ovary
28	chr9:116335000-116346800	Enhancers	Fetal Heart	heart
29	chr9:116335400-116338000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:116335800-116339000	Weak transcription	Gastric	stomach
31	chr9:116336000-116338000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:116336000-116338000	Enhancers	Pancreas	Pancrea
33	chr9:116336000-116339800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:116336200-116338000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr9:116336200-116339000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr9:116336200-116339600	Weak transcription	Brain Anterior Caudate	brain
37	chr9:116336400-116337800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr9:116336400-116339800	Weak transcription	Primary T cells from cord blood	blood
39	chr9:116336600-116337800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:116336600-116338000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:116336600-116338000	Enhancers	Lung	lung
42	chr9:116336600-116338200	Enhancers	H1 Cell Line	embryonic stem cell
43	chr9:116336600-116339400	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr9:116336600-116339600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr9:116336800-116337800	Enhancers	Fetal Muscle Leg	muscle
46	chr9:116336800-116338000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr9:116336800-116338000	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr9:116336800-116338200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr9:116336800-116338200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr9:116336800-116339400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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