Variant report

Variant	rs7899771
Chromosome Location	chr10:117019092-117019093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10399963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10400056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10400160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10466204	1.00[EUR][1000 genomes]
rs10885652	1.00[EUR][1000 genomes]
rs10885665	1.00[EUR][1000 genomes]
rs11197057	1.00[EUR][1000 genomes]
rs11197058	1.00[EUR][1000 genomes]
rs11197060	1.00[EUR][1000 genomes]
rs11197061	1.00[EUR][1000 genomes]
rs11197067	1.00[EUR][1000 genomes]
rs11197070	1.00[EUR][1000 genomes]
rs11197082	1.00[EUR][1000 genomes]
rs11197089	1.00[EUR][1000 genomes]
rs11197090	1.00[EUR][1000 genomes]
rs11197092	1.00[EUR][1000 genomes]
rs11197096	1.00[EUR][1000 genomes]
rs11197097	1.00[EUR][1000 genomes]
rs11197104	1.00[EUR][1000 genomes]
rs11197119	1.00[EUR][1000 genomes]
rs11197121	1.00[EUR][1000 genomes]
rs11819446	1.00[EUR][1000 genomes]
rs12098502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241864	1.00[EUR][1000 genomes]
rs12245856	1.00[EUR][1000 genomes]
rs12248612	1.00[EUR][1000 genomes]
rs12248846	1.00[EUR][1000 genomes]
rs12252344	1.00[EUR][1000 genomes]
rs12255157	1.00[EUR][1000 genomes]
rs12264153	1.00[EUR][1000 genomes]
rs12267097	1.00[EUR][1000 genomes]
rs13376959	1.00[EUR][1000 genomes]
rs1819630	1.00[AMR][1000 genomes]
rs2197305	1.00[EUR][1000 genomes]
rs2252627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28564357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28842563	1.00[EUR][1000 genomes]
rs57423028	1.00[EUR][1000 genomes]
rs60927673	1.00[EUR][1000 genomes]
rs647982	1.00[AMR][1000 genomes]
rs7069988	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7070487	1.00[EUR][1000 genomes]
rs7074608	1.00[EUR][1000 genomes]
rs7077627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7082007	1.00[EUR][1000 genomes]
rs7082592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093497	1.00[AFR][1000 genomes]
rs7093931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363470	1.00[EUR][1000 genomes]
rs7893964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7894112	1.00[EUR][1000 genomes]
rs7896027	1.00[EUR][1000 genomes]
rs7897375	1.00[EUR][1000 genomes]
rs7900110	1.00[EUR][1000 genomes]
rs7902966	1.00[EUR][1000 genomes]
rs7906551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7908005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7920152	1.00[EUR][1000 genomes]
rs7920260	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116997200-117049800	Weak transcription	Ovary	ovary
2	chr10:117011400-117034400	Weak transcription	Aorta	Aorta
3	chr10:117019000-117022200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:117019000-117034400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:117019000-117034600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links