Variant report

Variant	rs790378
Chromosome Location	chr11:83633318-83633319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11233773	0.95[CEU][hapmap]
rs11233790	0.89[CEU][hapmap]
rs11607390	1.00[CEU][hapmap]
rs1483392	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs1557431	0.81[CEU][hapmap]
rs1914202	0.84[CEU][hapmap]
rs790363	0.94[CEU][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs790376	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs790377	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs790379	0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs790380	0.85[ASN][1000 genomes]
rs790381	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7942499	0.89[CEU][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381595	chr11:83631458-83635697	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv555608	chr11:83633189-83651102	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83623200-83635800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83624600-83636000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:83629800-83634200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:83630200-83643200	Weak transcription	Brain Angular Gyrus	brain
8	chr11:83630400-83633400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:83630400-83633400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:83633000-83636800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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