Variant report

Variant	rs1483392
Chromosome Location	chr11:83607345-83607346
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10751099	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792697	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10898165	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10898176	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11233773	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11233790	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11600051	0.85[CHB][hapmap]
rs11600512	0.84[JPT][hapmap]
rs11607390	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12283213	0.91[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12574411	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12795520	0.87[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1384752	0.86[CHB][hapmap]
rs1400316	0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1483390	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1557431	0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1557433	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17146322	0.84[JPT][hapmap]
rs1914202	0.84[CEU][hapmap];0.86[CHB][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1973691	0.91[ASN][1000 genomes]
rs2086742	0.95[ASN][1000 genomes]
rs2220086	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs61901787	0.81[ASN][1000 genomes]
rs790363	0.94[CEU][hapmap];0.83[CHB][hapmap];0.96[YRI][hapmap]
rs790376	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs790377	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs790378	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs790381	0.83[YRI][hapmap]
rs7933890	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7942499	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs877985	0.84[JPT][hapmap]
rs922915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83606200-83608800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:83606400-83608400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83606600-83607400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:83606600-83607600	Enhancers	Brain Anterior Caudate	brain
5	chr11:83606600-83607800	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:83606800-83607400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:83606800-83608400	Enhancers	Brain Substantia Nigra	brain
8	chr11:83607000-83608000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:83607000-83611400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:83607200-83608400	Enhancers	Brain Hippocampus Middle	brain
11	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain

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