Variant report

Variant	rs61901787
Chromosome Location	chr11:83612954-83612955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10898165	0.84[ASN][1000 genomes]
rs11233773	0.84[ASN][1000 genomes]
rs11233790	0.85[ASN][1000 genomes]
rs11600051	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11600512	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11607390	0.99[ASN][1000 genomes]
rs12283213	0.84[ASN][1000 genomes]
rs12574411	0.84[ASN][1000 genomes]
rs12795520	0.85[ASN][1000 genomes]
rs1384752	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1400316	0.84[ASN][1000 genomes]
rs1483390	0.81[ASN][1000 genomes]
rs1483392	0.81[ASN][1000 genomes]
rs1557431	0.84[ASN][1000 genomes]
rs1557433	0.84[ASN][1000 genomes]
rs17146308	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17146322	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1914202	0.95[ASN][1000 genomes]
rs2027759	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2040308	0.83[ASN][1000 genomes]
rs2086742	0.82[ASN][1000 genomes]
rs2200206	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2220086	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2625520	0.89[AFR][1000 genomes]
rs4944452	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs57823093	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58831120	0.99[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61901820	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639162	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs790354	0.83[ASN][1000 genomes]
rs7933890	0.84[ASN][1000 genomes]
rs7942499	0.83[ASN][1000 genomes]
rs922915	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83608400-83620800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83609200-83616600	Weak transcription	Pancreas	Pancrea

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