Variant report

Variant	rs11607390
Chromosome Location	chr11:83608792-83608793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10751099	0.81[JPT][hapmap]
rs10792697	0.81[JPT][hapmap]
rs10898165	0.83[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs10898176	0.80[JPT][hapmap]
rs11233773	0.94[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11233790	0.94[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11600051	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11600512	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12283213	0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs12574411	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12795520	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1384752	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1400306	0.80[JPT][hapmap]
rs1400316	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs1483390	0.87[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1483392	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1540097	0.81[JPT][hapmap]
rs1557431	0.80[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1557433	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17146308	0.89[ASN][1000 genomes]
rs17146322	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1914202	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2027759	0.81[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2040308	0.83[ASN][1000 genomes]
rs2086742	0.83[ASN][1000 genomes]
rs2200206	0.92[ASN][1000 genomes]
rs2220086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4944452	0.87[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs57823093	0.89[ASN][1000 genomes]
rs58831120	0.88[ASN][1000 genomes]
rs61901787	0.99[ASN][1000 genomes]
rs61901820	0.95[ASN][1000 genomes]
rs72639162	0.89[ASN][1000 genomes]
rs790354	0.85[ASN][1000 genomes]
rs790363	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs790376	1.00[CEU][hapmap]
rs790377	1.00[CEU][hapmap]
rs790378	1.00[CEU][hapmap]
rs7933890	0.83[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7942499	0.94[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs877984	0.80[JPT][hapmap]
rs922915	0.83[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83606200-83608800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:83607000-83611400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:83607800-83608800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:83608000-83609000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:83608400-83620800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain

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