Variant report

Variant	rs11233790
Chromosome Location	chr11:83604840-83604841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10751099	0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10792697	0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs10898163	0.84[ASN][1000 genomes]
rs10898165	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs10898176	0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs11233773	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11600051	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs11600512	0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs11607390	0.94[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12283213	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs12574411	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12795520	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs1384752	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs1400306	0.87[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs1400316	0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs1483390	0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1483392	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1540097	0.87[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs1557431	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1557433	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17146308	0.91[ASN][1000 genomes]
rs17146322	0.91[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs1914202	0.83[CEU][hapmap];0.86[CHB][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1973691	0.84[ASN][1000 genomes]
rs2027759	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs2040308	0.95[ASN][1000 genomes]
rs2086742	0.81[ASN][1000 genomes]
rs2200206	0.91[ASN][1000 genomes]
rs2220086	0.82[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs2374462	0.84[ASN][1000 genomes]
rs4944452	0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[ASN][1000 genomes]
rs57823093	0.91[ASN][1000 genomes]
rs58831120	0.90[ASN][1000 genomes]
rs61901787	0.85[ASN][1000 genomes]
rs61901820	0.82[ASN][1000 genomes]
rs7108753	0.89[ASN][1000 genomes]
rs72639162	0.91[ASN][1000 genomes]
rs790363	0.81[ASW][hapmap];0.94[CEU][hapmap];0.94[TSI][hapmap];0.80[YRI][hapmap]
rs790376	0.89[CEU][hapmap]
rs790377	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs790378	0.89[CEU][hapmap]
rs7933890	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs7942499	0.93[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs877984	0.90[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs877985	0.87[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs922915	0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83577400-83606800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83578000-83606800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83585200-83606600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83585200-83606600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83603000-83606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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