Variant report

Variant	rs7942499
Chromosome Location	chr11:83610258-83610259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10751099	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10792697	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10898165	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10898176	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11233773	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11233790	0.93[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11600051	0.85[CHB][hapmap]
rs11600512	0.84[JPT][hapmap]
rs11607390	0.94[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12283213	0.91[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12574411	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12795520	0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1384752	0.86[CHB][hapmap]
rs1400306	0.84[JPT][hapmap]
rs1400316	0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1483390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1483392	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1540097	0.84[JPT][hapmap]
rs1557431	0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1557433	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17146322	0.84[JPT][hapmap]
rs1914202	0.83[CEU][hapmap];0.86[CHB][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1973691	0.92[ASN][1000 genomes]
rs2086742	0.97[ASN][1000 genomes]
rs2220086	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs61901787	0.83[ASN][1000 genomes]
rs61901820	0.80[ASN][1000 genomes]
rs790363	0.87[ASW][hapmap];0.94[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap]
rs790376	0.89[CEU][hapmap];0.90[YRI][hapmap]
rs790377	0.81[ASW][hapmap];0.89[CEU][hapmap];0.95[GIH][hapmap];0.80[LWK][hapmap];0.82[TSI][hapmap];0.89[YRI][hapmap]
rs790378	0.89[CEU][hapmap];0.90[YRI][hapmap]
rs790381	0.81[ASW][hapmap];0.89[GIH][hapmap];0.83[YRI][hapmap]
rs7933890	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs877984	0.84[JPT][hapmap]
rs877985	0.84[JPT][hapmap]
rs922915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607000-83611400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83608400-83620800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83609200-83616600	Weak transcription	Pancreas	Pancrea

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