Variant report

Variant	rs2220086
Chromosome Location	chr11:83607854-83607855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10751099	0.84[JPT][hapmap]
rs10792697	0.84[JPT][hapmap]
rs10898165	0.82[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs10898176	0.84[JPT][hapmap]
rs11233773	0.82[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs11233790	0.82[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs11600051	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11600512	1.00[ASW][hapmap];0.83[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11607390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12283213	0.86[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs12574411	0.86[ASN][1000 genomes]
rs12795520	0.82[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs1384752	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1400316	0.85[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1483390	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1483392	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1557431	0.82[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1557433	0.86[ASN][1000 genomes]
rs17146308	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17146322	1.00[ASW][hapmap];0.83[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1914202	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2027759	0.80[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2040308	0.85[ASN][1000 genomes]
rs2200206	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2625520	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4944452	1.00[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs57823093	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58831120	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61901787	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61901820	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639162	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs790354	0.83[ASN][1000 genomes]
rs790381	0.85[TSI][hapmap]
rs7933890	0.82[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7942499	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs877985	0.82[CHD][hapmap]
rs922915	0.86[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83606200-83608800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:83606400-83608400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83606800-83608400	Enhancers	Brain Substantia Nigra	brain
4	chr11:83607000-83608000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:83607000-83611400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:83607200-83608400	Enhancers	Brain Hippocampus Middle	brain
7	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
8	chr11:83607800-83608200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:83607800-83608800	Enhancers	Brain Inferior Temporal Lobe	brain

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