Variant report

Variant	rs17146322
Chromosome Location	chr11:83601276-83601277
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10751099	0.87[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs10792697	0.87[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs10898165	0.91[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10898176	0.87[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11233773	0.91[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs11233790	0.91[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs11600051	0.93[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11600512	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11607390	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12283213	0.91[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs12574411	0.89[ASN][1000 genomes]
rs12795520	0.91[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1384752	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1400316	0.86[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs1483390	0.89[JPT][hapmap]
rs1483392	0.84[JPT][hapmap]
rs1557431	0.91[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs1557433	0.89[ASN][1000 genomes]
rs17146308	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1914202	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2027759	0.85[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2040308	0.88[ASN][1000 genomes]
rs2200206	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2220086	1.00[ASW][hapmap];0.83[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2625520	0.94[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4944452	1.00[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs57823093	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58831120	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61901787	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61901820	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72639162	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs790381	0.94[CEU][hapmap]
rs7933890	0.91[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs7942499	0.84[JPT][hapmap]
rs877984	0.81[CHB][hapmap]
rs877985	0.84[CHD][hapmap]
rs922915	0.81[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898019	chr11:83556067-83602367	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv898020	chr11:83558738-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv898021	chr11:83562296-83602367	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898022	chr11:83562296-83602367	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv898023	chr11:83566115-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv898024	chr11:83576460-83602367	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83577400-83606800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83578000-83606800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83585200-83606600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83585200-83606600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links