Variant report

Variant	rs4944452
Chromosome Location	chr11:83583324-83583325
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10751099	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs10792697	0.82[CHB][hapmap]
rs10898163	0.83[ASN][1000 genomes]
rs10898165	0.86[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs10898176	0.82[CHB][hapmap]
rs11233773	0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs11233790	0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[ASN][1000 genomes]
rs11600051	0.95[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11600512	1.00[ASW][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11607390	0.87[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12283213	0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12574411	0.89[ASN][1000 genomes]
rs12795520	0.86[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs1384752	0.86[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1400306	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs1400316	0.81[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1483390	0.83[JPT][hapmap]
rs1540097	0.83[CHB][hapmap];0.85[ASN][1000 genomes]
rs1557431	0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1557433	0.89[ASN][1000 genomes]
rs17146308	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17146322	1.00[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1914202	0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2027759	0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2040308	0.91[ASN][1000 genomes]
rs2200206	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2220086	1.00[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2374462	0.83[ASN][1000 genomes]
rs2625520	0.95[YRI][hapmap]
rs57823093	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs58831120	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61901787	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61901820	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs72639162	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs790381	0.82[TSI][hapmap]
rs7933890	0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs877984	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs877985	0.83[CHB][hapmap];0.84[CHD][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898017	chr11:83556067-83583324	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv898018	chr11:83556067-83586526	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv898019	chr11:83556067-83602367	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898020	chr11:83558738-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv898021	chr11:83562296-83602367	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv898022	chr11:83562296-83602367	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898023	chr11:83566115-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898024	chr11:83576460-83602367	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83576000-83586400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:83577200-83584400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83577200-83584400	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83577400-83584600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83577400-83606800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83577800-83584400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83578000-83606800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:83582800-83585400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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