Variant report

Variant	rs808278
Chromosome Location	chr10:116562265-116562266
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11196894	1.00[ASN][1000 genomes]
rs217185	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs217186	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs217198	1.00[ASN][1000 genomes]
rs2532819	1.00[ASN][1000 genomes]
rs67402998	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808252	1.00[ASN][1000 genomes]
rs808257	1.00[ASN][1000 genomes]
rs808260	1.00[ASN][1000 genomes]
rs808261	1.00[ASN][1000 genomes]
rs808262	1.00[ASN][1000 genomes]
rs808277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808292	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808293	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808297	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808300	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808304	1.00[ASN][1000 genomes]
rs808308	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808309	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808310	1.00[ASN][1000 genomes]
rs808311	1.00[ASN][1000 genomes]
rs808312	1.00[ASN][1000 genomes]
rs808315	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808317	1.00[ASN][1000 genomes]
rs808318	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808319	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808320	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808324	1.00[ASN][1000 genomes]
rs808326	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808327	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808328	1.00[ASN][1000 genomes]
rs808329	1.00[ASN][1000 genomes]
rs808333	1.00[ASN][1000 genomes]
rs808334	1.00[ASN][1000 genomes]
rs808335	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808337	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808343	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs808345	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808354	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808356	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116556800-116566400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:116556800-116572800	Weak transcription	Pancreas	Pancrea
3	chr10:116560600-116562400	Enhancers	Primary T cells from cord blood	blood
4	chr10:116560600-116562600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr10:116560600-116566000	Weak transcription	Hela-S3	cervix
6	chr10:116561200-116562400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:116561400-116562400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:116561400-116562800	Enhancers	Fetal Thymus	thymus
9	chr10:116561400-116566600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:116561400-116568000	Weak transcription	HSMMtube	muscle
11	chr10:116561600-116562400	Enhancers	GM12878-XiMat	blood
12	chr10:116561600-116562600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:116561600-116562800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr10:116561600-116563000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:116561600-116563200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:116561600-116563200	Enhancers	Thymus	Thymus
17	chr10:116561600-116566200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:116561600-116566800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:116561800-116562400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:116561800-116562800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr10:116561800-116562800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:116561800-116562800	Enhancers	Dnd41	blood
23	chr10:116561800-116570600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr10:116562000-116570400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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