Variant report

Variant	rs808345
Chromosome Location	chr10:116531580-116531581
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116529761..116532511-chr10:116581268..116583823,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11196894	1.00[ASN][1000 genomes]
rs217185	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs217186	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs217198	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532819	1.00[ASN][1000 genomes]
rs67402998	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808252	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808257	1.00[ASN][1000 genomes]
rs808260	1.00[ASN][1000 genomes]
rs808261	1.00[ASN][1000 genomes]
rs808262	1.00[ASN][1000 genomes]
rs808277	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808278	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808284	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808293	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808297	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808300	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808304	1.00[ASN][1000 genomes]
rs808308	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808309	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808310	1.00[ASN][1000 genomes]
rs808311	1.00[ASN][1000 genomes]
rs808312	1.00[ASN][1000 genomes]
rs808315	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808317	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808318	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808319	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808320	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808324	1.00[ASN][1000 genomes]
rs808326	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808327	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808328	1.00[ASN][1000 genomes]
rs808329	1.00[ASN][1000 genomes]
rs808333	1.00[ASN][1000 genomes]
rs808334	1.00[ASN][1000 genomes]
rs808335	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808337	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs808354	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808356	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116528400-116531800	Weak transcription	HUVEC	blood vessel
2	chr10:116528400-116531800	Weak transcription	NH-A	brain
3	chr10:116528600-116539600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:116528600-116540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:116528800-116531800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:116531400-116532600	Enhancers	Osteobl	bone

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