Variant report

Variant	rs808310
Chromosome Location	chr10:116509998-116509999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11196871	0.91[TSI][hapmap]
rs11196894	1.00[ASN][1000 genomes]
rs217185	1.00[ASN][1000 genomes]
rs217186	1.00[ASN][1000 genomes]
rs217198	1.00[ASN][1000 genomes]
rs2532819	1.00[ASN][1000 genomes]
rs67402998	1.00[ASN][1000 genomes]
rs7091958	0.91[TSI][hapmap]
rs808252	1.00[ASN][1000 genomes]
rs808257	1.00[ASN][1000 genomes]
rs808260	1.00[ASN][1000 genomes]
rs808261	1.00[ASN][1000 genomes]
rs808262	1.00[ASN][1000 genomes]
rs808277	1.00[ASN][1000 genomes]
rs808278	1.00[ASN][1000 genomes]
rs808284	1.00[ASN][1000 genomes]
rs808292	1.00[ASN][1000 genomes]
rs808293	1.00[ASN][1000 genomes]
rs808297	1.00[ASN][1000 genomes]
rs808300	1.00[ASN][1000 genomes]
rs808304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808308	1.00[ASN][1000 genomes]
rs808309	1.00[ASN][1000 genomes]
rs808311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808313	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs808315	1.00[ASN][1000 genomes]
rs808317	1.00[ASN][1000 genomes]
rs808318	1.00[ASN][1000 genomes]
rs808319	1.00[ASN][1000 genomes]
rs808320	1.00[ASN][1000 genomes]
rs808324	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808326	1.00[ASN][1000 genomes]
rs808327	1.00[ASN][1000 genomes]
rs808328	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808329	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808333	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808334	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808335	1.00[ASN][1000 genomes]
rs808337	1.00[ASN][1000 genomes]
rs808345	1.00[ASN][1000 genomes]
rs808354	1.00[ASN][1000 genomes]
rs808356	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs808310	PDCD4	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116486800-116514600	Weak transcription	Pancreas	Pancrea
2	chr10:116503200-116514600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116507000-116510200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:116507000-116512000	Enhancers	Primary hematopoietic stem cells	blood
5	chr10:116507200-116510000	Enhancers	Fetal Intestine Large	intestine
6	chr10:116508000-116510000	Enhancers	Fetal Intestine Small	intestine
7	chr10:116508400-116513400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:116508600-116511200	Weak transcription	Right Atrium	heart
9	chr10:116509000-116517200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:116509200-116511000	Enhancers	Fetal Heart	heart
11	chr10:116509200-116514200	Weak transcription	Brain Anterior Caudate	brain
12	chr10:116509400-116510000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:116509600-116513000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:116509600-116514000	Weak transcription	Liver	Liver
15	chr10:116509800-116510800	Weak transcription	Left Ventricle	heart
16	chr10:116509800-116510800	Weak transcription	Right Ventricle	heart
17	chr10:116509800-116511200	Weak transcription	Adipose Nuclei	Adipose
18	chr10:116509800-116512000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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