Variant report

Variant	rs808262
Chromosome Location	chr10:116467835-116467836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11196856	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11196866	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11196868	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11196870	0.88[EUR][1000 genomes]
rs11196880	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11196894	1.00[ASN][1000 genomes]
rs12782152	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs217185	1.00[ASN][1000 genomes]
rs217186	1.00[ASN][1000 genomes]
rs217188	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs217193	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs217195	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs217196	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs217197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs217198	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67402998	1.00[ASN][1000 genomes]
rs7909333	1.00[ASW][hapmap]
rs808252	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808260	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808277	1.00[ASN][1000 genomes]
rs808278	1.00[ASN][1000 genomes]
rs808284	1.00[ASN][1000 genomes]
rs808292	1.00[ASN][1000 genomes]
rs808293	1.00[ASN][1000 genomes]
rs808297	1.00[ASN][1000 genomes]
rs808300	1.00[ASN][1000 genomes]
rs808304	1.00[ASN][1000 genomes]
rs808308	1.00[ASN][1000 genomes]
rs808309	1.00[ASN][1000 genomes]
rs808310	1.00[ASN][1000 genomes]
rs808311	1.00[ASN][1000 genomes]
rs808312	1.00[ASN][1000 genomes]
rs808315	1.00[ASN][1000 genomes]
rs808317	1.00[ASN][1000 genomes]
rs808318	1.00[ASN][1000 genomes]
rs808319	1.00[ASN][1000 genomes]
rs808320	1.00[ASN][1000 genomes]
rs808324	1.00[ASN][1000 genomes]
rs808326	1.00[ASN][1000 genomes]
rs808327	1.00[ASN][1000 genomes]
rs808328	1.00[ASN][1000 genomes]
rs808329	1.00[ASN][1000 genomes]
rs808333	1.00[ASN][1000 genomes]
rs808334	1.00[ASN][1000 genomes]
rs808335	1.00[ASN][1000 genomes]
rs808337	1.00[ASN][1000 genomes]
rs808345	1.00[ASN][1000 genomes]
rs808354	1.00[ASN][1000 genomes]
rs808356	1.00[ASN][1000 genomes]
rs9421197	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116457400-116468000	Weak transcription	A549	lung
2	chr10:116457400-116468200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:116465000-116471200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:116465200-116472600	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:116465400-116468600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:116465400-116470600	Enhancers	Hela-S3	cervix
7	chr10:116465400-116472200	Weak transcription	Brain Anterior Caudate	brain
8	chr10:116466200-116468000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:116466400-116468800	Enhancers	Right Ventricle	heart
10	chr10:116466400-116473600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:116466600-116468000	Weak transcription	HMEC	breast
12	chr10:116466600-116468000	Weak transcription	NHDF-Ad	bronchial
13	chr10:116466600-116468400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:116466600-116469600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:116466800-116469000	Enhancers	Left Ventricle	heart
16	chr10:116466800-116473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr10:116467800-116468000	Enhancers	Right Atrium	heart
18	chr10:116467800-116468400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr10:116467800-116468800	Enhancers	Adipose Nuclei	Adipose
20	chr10:116467800-116468800	Enhancers	Stomach Mucosa	stomach
21	chr10:116467800-116469800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links