Variant report

Variant	rs217186
Chromosome Location	chr10:116486759-116486760
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116485011..116486962-chr10:116487146..116489328,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11196802	1.00[ASW][hapmap]
rs11196806	1.00[ASW][hapmap]
rs11196810	1.00[ASW][hapmap]
rs11196826	1.00[ASW][hapmap]
rs11196841	1.00[ASW][hapmap]
rs11196894	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12768716	1.00[ASW][hapmap]
rs217185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs217188	1.00[GIH][hapmap];0.93[TSI][hapmap]
rs217198	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532819	1.00[ASN][1000 genomes]
rs67402998	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808252	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808257	1.00[ASN][1000 genomes]
rs808260	1.00[ASN][1000 genomes]
rs808261	1.00[ASN][1000 genomes]
rs808262	1.00[ASN][1000 genomes]
rs808277	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808278	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808284	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808292	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808293	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808297	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808300	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808304	1.00[ASN][1000 genomes]
rs808308	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808309	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808310	1.00[ASN][1000 genomes]
rs808311	1.00[ASN][1000 genomes]
rs808312	1.00[ASN][1000 genomes]
rs808315	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808317	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808318	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808319	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808320	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808324	1.00[ASN][1000 genomes]
rs808326	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808327	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808328	1.00[ASN][1000 genomes]
rs808329	1.00[ASN][1000 genomes]
rs808333	1.00[ASN][1000 genomes]
rs808334	1.00[ASN][1000 genomes]
rs808335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808343	0.89[EUR][1000 genomes]
rs808345	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs217186	LILRA3	trans	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116482200-116487000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:116482800-116488600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:116483400-116493800	Weak transcription	Right Atrium	heart
4	chr10:116485200-116486800	Weak transcription	Fetal Heart	heart
5	chr10:116485400-116487000	Enhancers	Left Ventricle	heart
6	chr10:116485600-116486800	Enhancers	Pancreas	Pancrea
7	chr10:116486000-116486800	Enhancers	Stomach Mucosa	stomach
8	chr10:116486200-116486800	Enhancers	Gastric	stomach
9	chr10:116486200-116486800	Enhancers	Right Ventricle	heart
10	chr10:116486400-116486800	Weak transcription	Adipose Nuclei	Adipose
11	chr10:116486400-116486800	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr10:116486400-116487200	Enhancers	Liver	Liver
13	chr10:116486600-116486800	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:116486600-116486800	Enhancers	A549	lung
15	chr10:116486600-116487000	Flanking Active TSS	Hela-S3	cervix
16	chr10:116486600-116497000	Weak transcription	Lung	lung

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