The 2.0 version of rSNPBase

Variant report

Variant rs837116
Chromosome Location chr5:40735975-40735976
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40692400-40741200 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr5:40709600-40745000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr5:40712800-40741200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr5:40713200-40740600 Weak transcription Right Ventricle heart
5 chr5:40714600-40739400 Weak transcription GM12878-XiMat blood
6 chr5:40715400-40739400 Weak transcription Placenta Amnion Placenta Amnion
7 chr5:40721200-40739600 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr5:40721400-40739600 Weak transcription Placenta Placenta
9 chr5:40721400-40741400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr5:40721600-40736000 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr5:40721800-40738800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr5:40721800-40739000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr5:40721800-40740600 Weak transcription Fetal Brain Male brain
14 chr5:40722200-40739400 Weak transcription Primary B cells from cord blood blood
15 chr5:40722800-40739200 Weak transcription Fetal Brain Female brain
16 chr5:40722800-40741400 Weak transcription Aorta Aorta
17 chr5:40722800-40755200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr5:40723000-40741600 Weak transcription Lung lung
19 chr5:40724200-40740600 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr5:40724400-40737000 Weak transcription Brain Germinal Matrix brain
21 chr5:40724400-40738800 Weak transcription A549 lung
22 chr5:40724600-40740800 Weak transcription Fetal Muscle Trunk muscle
23 chr5:40724800-40740600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr5:40728200-40739000 Weak transcription Primary B cells from peripheral blood blood
25 chr5:40728200-40745600 Weak transcription HUES64 Cell Line embryonic stem cell
26 chr5:40728400-40739400 Weak transcription Left Ventricle heart
27 chr5:40728600-40739400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr5:40728600-40739400 Weak transcription Thymus Thymus
29 chr5:40728600-40740400 Weak transcription Fetal Thymus thymus
30 chr5:40728600-40741200 Weak transcription Fetal Stomach stomach
31 chr5:40728800-40741200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr5:40729000-40741400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr5:40729200-40738800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr5:40729200-40739400 Weak transcription Primary neutrophils fromperipheralblood blood
35 chr5:40729200-40741400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr5:40729400-40738800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr5:40730400-40739600 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr5:40731200-40736600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr5:40732400-40736600 Enhancers Rectal Mucosa Donor 31 rectum
40 chr5:40732600-40736400 Enhancers Fetal Intestine Large intestine
41 chr5:40732800-40736400 Enhancers Primary hematopoietic stem cells blood
42 chr5:40733200-40736200 Enhancers Stomach Mucosa stomach
43 chr5:40733400-40736600 Enhancers Liver Liver
44 chr5:40733400-40736600 Enhancers Duodenum Mucosa Duodenum
45 chr5:40733600-40736000 Enhancers Ovary ovary
46 chr5:40733600-40736000 Enhancers Sigmoid Colon Sigmoid Colon
47 chr5:40733600-40736400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
48 chr5:40733600-40736400 Enhancers Brain Angular Gyrus brain
49 chr5:40733600-40736400 Enhancers Brain Substantia Nigra brain
50 chr5:40733600-40736400 Enhancers Colon Smooth Muscle Colon

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Last update: Aug 31, 2015