The 2.0 version of rSNPBase

Variant report

Variant rs249412
Chromosome Location chr5:40721399-40721400
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40692400-40741200 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr5:40692800-40733800 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr5:40692800-40735000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr5:40693600-40727400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr5:40695200-40727000 Weak transcription HSMM muscle
6 chr5:40700800-40722200 Weak transcription Lung lung
7 chr5:40701000-40722200 Weak transcription Esophagus oesophagus
8 chr5:40705600-40727000 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr5:40709600-40745000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr5:40710400-40721400 Weak transcription Rectal Smooth Muscle rectum
11 chr5:40712800-40741200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr5:40713000-40722200 Weak transcription Gastric stomach
13 chr5:40713000-40722200 Weak transcription Pancreas Pancrea
14 chr5:40713200-40740600 Weak transcription Right Ventricle heart
15 chr5:40713600-40734800 Weak transcription Hela-S3 cervix
16 chr5:40714400-40721400 Weak transcription Brain Hippocampus Middle brain
17 chr5:40714400-40727400 Weak transcription Brain Anterior Caudate brain
18 chr5:40714600-40739400 Weak transcription GM12878-XiMat blood
19 chr5:40715400-40733600 Weak transcription Fetal Heart heart
20 chr5:40715400-40739400 Weak transcription Placenta Amnion Placenta Amnion
21 chr5:40715600-40734800 Weak transcription NHEK skin
22 chr5:40716400-40733200 Weak transcription HUVEC blood vessel
23 chr5:40716400-40733600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr5:40716400-40733800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr5:40716800-40724000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr5:40717000-40727400 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr5:40717600-40722200 Weak transcription Colonic Mucosa Colon
28 chr5:40717600-40733600 Weak transcription Brain Inferior Temporal Lobe brain
29 chr5:40717800-40724000 Weak transcription A549 lung
30 chr5:40717800-40727400 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr5:40717800-40733600 Weak transcription Brain Substantia Nigra brain
32 chr5:40717800-40733600 Weak transcription NHDF-Ad bronchial
33 chr5:40717800-40734400 Weak transcription NH-A brain
34 chr5:40718000-40724000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr5:40718000-40727000 Weak transcription Osteobl bone
36 chr5:40718000-40727400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr5:40718600-40722600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr5:40719400-40721600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr5:40719400-40722800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr5:40719800-40721400 Strong transcription Duodenum Mucosa Duodenum
41 chr5:40719800-40722000 Strong transcription Primary T helper cells fromperipheralblood blood
42 chr5:40720000-40727400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr5:40720000-40733600 Weak transcription Fetal Kidney kidney
44 chr5:40720400-40722400 Strong transcription Primary T cells from cord blood blood
45 chr5:40720400-40723600 Weak transcription K562 blood
46 chr5:40720600-40721400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
47 chr5:40720600-40721400 Strong transcription Duodenum Smooth Muscle Duodenum
48 chr5:40720600-40721400 Strong transcription Left Ventricle heart
49 chr5:40720600-40721600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr5:40720600-40721600 Strong transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015