The 2.0 version of rSNPBase

Variant report

Variant rs249424
Chromosome Location chr5:40753417-40753418
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40722800-40755200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr5:40736000-40755200 Weak transcription Pancreas Pancrea
3 chr5:40736200-40754200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr5:40736400-40753800 Weak transcription Fetal Heart heart
5 chr5:40736400-40754200 Weak transcription Gastric stomach
6 chr5:40736400-40754200 Weak transcription NHLF lung
7 chr5:40736600-40754200 Weak transcription Osteobl bone
8 chr5:40738000-40754200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr5:40739400-40754200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr5:40739800-40754200 Weak transcription NHEK skin
11 chr5:40740800-40754200 Weak transcription HSMMtube muscle
12 chr5:40741000-40754200 Weak transcription Colonic Mucosa Colon
13 chr5:40741600-40754200 Weak transcription K562 blood
14 chr5:40741800-40753800 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr5:40741800-40754000 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr5:40741800-40754200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr5:40741800-40754200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr5:40741800-40754200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr5:40741800-40754200 Weak transcription Brain Cingulate Gyrus brain
20 chr5:40741800-40754200 Weak transcription Fetal Brain Male brain
21 chr5:40741800-40754200 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr5:40741800-40754200 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr5:40741800-40754200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr5:40741800-40754200 Weak transcription Stomach Smooth Muscle stomach
25 chr5:40741800-40754200 Weak transcription NH-A brain
26 chr5:40741800-40754400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr5:40741800-40754400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr5:40741800-40754400 Weak transcription Placenta Amnion Placenta Amnion
29 chr5:40742000-40753600 Weak transcription GM12878-XiMat blood
30 chr5:40742000-40754200 Weak transcription Primary T cells from cord blood blood
31 chr5:40742000-40754200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr5:40742000-40754200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr5:40742000-40754200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr5:40742000-40754200 Weak transcription Lung lung
35 chr5:40742000-40754200 Weak transcription Ovary ovary
36 chr5:40742000-40754400 Weak transcription Cortex derived primary cultured neurospheres brain
37 chr5:40742000-40754800 Weak transcription Aorta Aorta
38 chr5:40742000-40755200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr5:40742000-40755200 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr5:40742000-40755400 Weak transcription Spleen Spleen
41 chr5:40742200-40753600 Weak transcription HepG2 liver
42 chr5:40742200-40754000 Weak transcription Liver Liver
43 chr5:40742200-40754200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr5:40742200-40754200 Weak transcription Fetal Intestine Small intestine
45 chr5:40742200-40754200 Weak transcription Fetal Kidney kidney
46 chr5:40742200-40754200 Weak transcription Fetal Stomach stomach
47 chr5:40742200-40754200 Weak transcription Fetal Thymus thymus
48 chr5:40742200-40754600 Weak transcription Adipose Nuclei Adipose
49 chr5:40742400-40754200 Weak transcription NHDF-Ad bronchial
50 chr5:40742400-40754800 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015