The 2.0 version of rSNPBase

Variant report

Variant rs249421
Chromosome Location chr5:40741722-40741723
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40709600-40745000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr5:40722800-40755200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr5:40728200-40745600 Weak transcription HUES64 Cell Line embryonic stem cell
4 chr5:40736000-40747200 Weak transcription HMEC breast
5 chr5:40736000-40755200 Weak transcription Pancreas Pancrea
6 chr5:40736200-40754200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr5:40736400-40746400 Weak transcription Muscle Satellite Cultured Cells --
8 chr5:40736400-40747000 Weak transcription Small Intestine intestine
9 chr5:40736400-40753800 Weak transcription Fetal Heart heart
10 chr5:40736400-40754200 Weak transcription Gastric stomach
11 chr5:40736400-40754200 Weak transcription NHLF lung
12 chr5:40736600-40754200 Weak transcription Osteobl bone
13 chr5:40738000-40754200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr5:40738800-40741800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr5:40738800-40741800 Strong transcription Brain Hippocampus Middle brain
16 chr5:40738800-40742000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr5:40739000-40742000 Strong transcription Primary T helper naive cells fromperipheralblood blood
18 chr5:40739000-40742000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr5:40739000-40742800 Strong transcription Monocytes-CD14+_RO01746 blood
20 chr5:40739200-40741800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr5:40739200-40742000 ZNF genes & repeats Primary T cells from cord blood blood
22 chr5:40739200-40742000 ZNF genes & repeats Fetal Brain Female brain
23 chr5:40739400-40741800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr5:40739400-40741800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
25 chr5:40739400-40741800 ZNF genes & repeats Fetal Intestine Large intestine
26 chr5:40739400-40741800 Strong transcription Placenta Amnion Placenta Amnion
27 chr5:40739400-40742000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr5:40739400-40742000 Strong transcription Duodenum Mucosa Duodenum
29 chr5:40739400-40742000 Strong transcription Left Ventricle heart
30 chr5:40739400-40742000 Strong transcription Thymus Thymus
31 chr5:40739400-40742000 ZNF genes & repeats GM12878-XiMat blood
32 chr5:40739400-40742200 Strong transcription Primary neutrophils fromperipheralblood blood
33 chr5:40739400-40742200 Strong transcription Brain Anterior Caudate brain
34 chr5:40739400-40742200 ZNF genes & repeats Fetal Intestine Small intestine
35 chr5:40739400-40742800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr5:40739400-40743200 Strong transcription Rectal Mucosa Donor 29 rectum
37 chr5:40739400-40754200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr5:40739600-40741800 ZNF genes & repeats Primary hematopoietic stem cells blood
39 chr5:40739600-40741800 Strong transcription Primary T helper naive cells from peripheral blood blood
40 chr5:40739600-40741800 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
41 chr5:40739600-40741800 ZNF genes & repeats Fetal Muscle Leg muscle
42 chr5:40739600-40741800 ZNF genes & repeats Dnd41 blood
43 chr5:40739600-40742600 Strong transcription Primary monocytes fromperipheralblood blood
44 chr5:40739600-40742600 Strong transcription Primary T helper cells fromperipheralblood blood
45 chr5:40739800-40743200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr5:40739800-40754200 Weak transcription NHEK skin
47 chr5:40740000-40742200 Strong transcription Liver Liver
48 chr5:40740200-40742200 Strong transcription Fetal Kidney kidney
49 chr5:40740200-40742600 Weak transcription ES-WA7 Cell Line embryonic stem cell
50 chr5:40740200-40745800 Strong transcription Hela-S3 cervix

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Last update: Aug 31, 2015