Variant report

Variant	rs29737
Chromosome Location	chr5:40763757-40763758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:40762484..40765387-chr5:40833487..40838148,4	K562	blood:
2	chr5:40759028..40761149-chr5:40761190..40763782,3	MCF-7	breast:
3	chr5:40761961..40764811-chr5:40832028..40833924,2	MCF-7	breast:
4	chr5:40761485..40763943-chr5:40764095..40766160,2	K562	blood:
5	chr5:40760388..40764938-chr5:40832988..40836769,5	MCF-7	breast:
6	chr5:40759710..40764703-chr5:40796509..40801670,5	K562	blood:

Variant related genes	Relation type
ENSG00000212296	Chromatin interaction
ENSG00000132356	Chromatin interaction
ENSG00000145592	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1070444	1.00[JPT][hapmap]
rs1070445	1.00[JPT][hapmap]
rs1097592	1.00[JPT][hapmap]
rs152374	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs152376	0.94[ASN][1000 genomes]
rs1530811	1.00[JPT][hapmap]
rs154269	1.00[ASN][1000 genomes]
rs154270	0.94[ASN][1000 genomes]
rs154271	0.94[ASN][1000 genomes]
rs154272	0.81[ASN][1000 genomes]
rs154274	1.00[JPT][hapmap]
rs154276	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs154277	1.00[ASN][1000 genomes]
rs154278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs154282	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs154283	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1645509	0.81[ASN][1000 genomes]
rs166282	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs173618	0.94[ASN][1000 genomes]
rs173619	0.81[ASN][1000 genomes]
rs181818	0.83[ASN][1000 genomes]
rs181820	0.81[ASN][1000 genomes]
rs181821	0.81[ASN][1000 genomes]
rs183138	0.94[ASN][1000 genomes]
rs185114	1.00[ASN][1000 genomes]
rs185115	1.00[ASN][1000 genomes]
rs185381	1.00[ASN][1000 genomes]
rs187274	1.00[JPT][hapmap]
rs192962	1.00[JPT][hapmap]
rs249408	0.87[ASN][1000 genomes]
rs249409	0.87[ASN][1000 genomes]
rs249411	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs249412	0.87[ASN][1000 genomes]
rs249421	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs249424	1.00[ASN][1000 genomes]
rs249426	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs249427	1.00[ASN][1000 genomes]
rs249431	1.00[ASN][1000 genomes]
rs249432	0.94[ASN][1000 genomes]
rs249433	0.94[ASN][1000 genomes]
rs249434	0.94[ASN][1000 genomes]
rs249435	0.94[ASN][1000 genomes]
rs249439	0.81[ASN][1000 genomes]
rs29741	1.00[ASN][1000 genomes]
rs29762	1.00[JPT][hapmap]
rs29763	1.00[JPT][hapmap]
rs29764	1.00[JPT][hapmap]
rs323556	1.00[JPT][hapmap]
rs323562	1.00[JPT][hapmap]
rs34236150	0.81[ASN][1000 genomes]
rs370346	0.81[ASN][1000 genomes]
rs380334	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs382916	1.00[ASN][1000 genomes]
rs396412	0.81[ASN][1000 genomes]
rs4129381	0.87[ASN][1000 genomes]
rs424787	0.81[ASN][1000 genomes]
rs42515	1.00[JPT][hapmap]
rs438604	0.81[ASN][1000 genomes]
rs441016	0.81[ASN][1000 genomes]
rs445367	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs455374	0.81[ASN][1000 genomes]
rs455519	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs456929	1.00[ASN][1000 genomes]
rs456995	1.00[ASN][1000 genomes]
rs457111	0.81[ASN][1000 genomes]
rs458884	0.81[ASN][1000 genomes]
rs459491	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs459794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs460752	0.81[ASN][1000 genomes]
rs461612	1.00[ASN][1000 genomes]
rs463040	0.81[ASN][1000 genomes]
rs463675	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs463905	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs464045	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs464191	0.81[ASN][1000 genomes]
rs465467	0.81[ASN][1000 genomes]
rs467438	0.81[ASN][1000 genomes]
rs694217	1.00[JPT][hapmap]
rs704032	0.94[ASN][1000 genomes]
rs704033	0.94[ASN][1000 genomes]
rs704034	1.00[JPT][hapmap]
rs837100	1.00[ASN][1000 genomes]
rs837102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs837105	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs837109	1.00[CHB][hapmap]
rs837119	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs837267	1.00[ASN][1000 genomes]
rs837279	0.94[ASN][1000 genomes]
rs837378	1.00[JPT][hapmap]
rs837385	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881377	chr5:40753877-40810426	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv881070	chr5:40753877-40827307	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv880438	chr5:40753877-40900717	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40756000-40776000	Weak transcription	Aorta	Aorta
2	chr5:40756000-40780600	Weak transcription	Spleen	Spleen
3	chr5:40756200-40766800	Weak transcription	Small Intestine	intestine
4	chr5:40756200-40775200	Weak transcription	Stomach Mucosa	stomach
5	chr5:40756200-40797200	Weak transcription	Gastric	stomach
6	chr5:40756400-40764000	Weak transcription	Ovary	ovary
7	chr5:40756400-40764200	Weak transcription	Colonic Mucosa	Colon
8	chr5:40756400-40764600	Weak transcription	Fetal Lung	lung
9	chr5:40756400-40773800	Weak transcription	Lung	lung
10	chr5:40756400-40775000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:40756400-40776200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:40756400-40776400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:40756400-40776800	Weak transcription	Psoas Muscle	Psoas
14	chr5:40756400-40780600	Weak transcription	Esophagus	oesophagus
15	chr5:40756400-40785200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:40756400-40797400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:40756600-40764200	Weak transcription	NHEK	skin
18	chr5:40756600-40764400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr5:40756600-40764400	Weak transcription	Brain Angular Gyrus	brain
20	chr5:40756600-40764400	Weak transcription	Brain Anterior Caudate	brain
21	chr5:40756600-40764400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:40756600-40764400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr5:40756600-40764400	Weak transcription	Fetal Brain Female	brain
24	chr5:40756600-40764400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:40756600-40764600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr5:40756600-40764600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:40756600-40764600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:40756600-40764600	Weak transcription	Right Ventricle	heart
29	chr5:40756600-40766400	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:40756600-40766800	Weak transcription	Brain Germinal Matrix	brain
31	chr5:40756600-40766800	Weak transcription	Left Ventricle	heart
32	chr5:40756600-40767600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:40756600-40770200	Weak transcription	Fetal Intestine Small	intestine
34	chr5:40756600-40775800	Weak transcription	Fetal Heart	heart
35	chr5:40756600-40776000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:40756600-40780600	Weak transcription	Pancreas	Pancrea
37	chr5:40756600-40781200	Weak transcription	Fetal Brain Male	brain
38	chr5:40757200-40777200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:40757400-40768600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr5:40757600-40773600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:40758200-40777000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr5:40758400-40777800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr5:40758800-40767800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:40759000-40776200	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr5:40759400-40777000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:40759400-40777200	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:40759600-40767800	Strong transcription	Primary hematopoietic stem cells	blood
48	chr5:40759600-40776000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr5:40759800-40768200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:40759800-40769800	Strong transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links