The 2.0 version of rSNPBase

Variant report

Variant rs249409
Chromosome Location chr5:40719442-40719443
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40692400-40741200 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr5:40692800-40721000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr5:40692800-40733800 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr5:40692800-40735000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr5:40693600-40727400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr5:40694800-40721000 Weak transcription Thymus Thymus
7 chr5:40695200-40727000 Weak transcription HSMM muscle
8 chr5:40699000-40720800 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr5:40700800-40720600 Weak transcription Left Ventricle heart
10 chr5:40700800-40720800 Weak transcription Spleen Spleen
11 chr5:40700800-40722200 Weak transcription Lung lung
12 chr5:40701000-40720800 Weak transcription Aorta Aorta
13 chr5:40701000-40722200 Weak transcription Esophagus oesophagus
14 chr5:40705600-40727000 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr5:40706400-40719800 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr5:40706400-40720600 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr5:40706400-40720800 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr5:40706400-40721000 Weak transcription Stomach Smooth Muscle stomach
19 chr5:40707000-40720600 Weak transcription Fetal Muscle Leg muscle
20 chr5:40707600-40720800 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr5:40709400-40721000 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr5:40709600-40745000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr5:40710400-40721400 Weak transcription Rectal Smooth Muscle rectum
24 chr5:40710600-40720800 Weak transcription Fetal Thymus thymus
25 chr5:40710800-40720800 Weak transcription Primary hematopoietic stem cells blood
26 chr5:40711000-40720600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr5:40711000-40720800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr5:40711200-40721000 Weak transcription Fetal Muscle Trunk muscle
29 chr5:40711800-40720600 Weak transcription Psoas Muscle Psoas
30 chr5:40712400-40720800 Weak transcription Pancreatic Islets Pancreatic Islet
31 chr5:40712800-40720400 Weak transcription Primary T cells from cord blood blood
32 chr5:40712800-40741200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr5:40713000-40720600 Weak transcription Ovary ovary
34 chr5:40713000-40722200 Weak transcription Gastric stomach
35 chr5:40713000-40722200 Weak transcription Pancreas Pancrea
36 chr5:40713200-40740600 Weak transcription Right Ventricle heart
37 chr5:40713600-40721000 Weak transcription Brain Germinal Matrix brain
38 chr5:40713600-40734800 Weak transcription Hela-S3 cervix
39 chr5:40714400-40719600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr5:40714400-40720600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr5:40714400-40720800 Weak transcription Primary monocytes fromperipheralblood blood
42 chr5:40714400-40721200 Weak transcription Colon Smooth Muscle Colon
43 chr5:40714400-40721400 Weak transcription Brain Hippocampus Middle brain
44 chr5:40714400-40727400 Weak transcription Brain Anterior Caudate brain
45 chr5:40714600-40720800 Weak transcription Small Intestine intestine
46 chr5:40714600-40720800 Weak transcription HSMMtube muscle
47 chr5:40714600-40739400 Weak transcription GM12878-XiMat blood
48 chr5:40714800-40719600 Weak transcription Duodenum Mucosa Duodenum
49 chr5:40714800-40720600 Weak transcription Primary B cells from peripheral blood blood
50 chr5:40715000-40721000 Weak transcription Cortex derived primary cultured neurospheres brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015