Variant report

Variant rs42515
Chromosome Location chr5:40835530-40835531
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40833200-40836400 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
2 chr5:40833400-40836000 Active TSS Right Ventricle heart
3 chr5:40833400-40836200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr5:40833600-40836000 Flanking Active TSS Primary hematopoietic stem cells blood
5 chr5:40833600-40836200 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr5:40833600-40836600 Active TSS Pancreatic Islets Pancreatic Islet
7 chr5:40833800-40836000 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr5:40833800-40836000 Active TSS Gastric stomach
9 chr5:40833800-40836600 Active TSS Ovary ovary
10 chr5:40834000-40836400 Active TSS Colonic Mucosa Colon
11 chr5:40834000-40836600 Active TSS ES-WA7 Cell Line embryonic stem cell
12 chr5:40834200-40835600 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr5:40834200-40835600 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
14 chr5:40834200-40835600 Active TSS Rectal Mucosa Donor 29 rectum
15 chr5:40834200-40835800 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
16 chr5:40834200-40835800 Active TSS Sigmoid Colon Sigmoid Colon
17 chr5:40834200-40835800 Active TSS Stomach Mucosa stomach
18 chr5:40834200-40836000 Active TSS Pancreas Pancrea
19 chr5:40834200-40836000 Active TSS Small Intestine intestine
20 chr5:40834200-40836200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr5:40834200-40836200 Active TSS Esophagus oesophagus
22 chr5:40834200-40836200 Active TSS Fetal Intestine Small intestine
23 chr5:40834200-40836200 Active TSS Left Ventricle heart
24 chr5:40834200-40836400 Active TSS Placenta Amnion Placenta Amnion
25 chr5:40834200-40836600 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
26 chr5:40834200-40836600 Active TSS Brain Cingulate Gyrus brain
27 chr5:40834400-40835600 Active TSS Primary T helper memory cells from peripheral blood 2 blood
28 chr5:40834400-40835600 Active TSS Primary T helper naive cells from peripheral blood blood
29 chr5:40834400-40835600 Active TSS Primary T helper memory cells from peripheral blood 1 blood
30 chr5:40834400-40835600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
31 chr5:40834400-40835600 Active TSS Fetal Muscle Leg muscle
32 chr5:40834400-40835600 Active TSS Placenta Placenta
33 chr5:40834400-40835600 Active TSS NHDF-Ad bronchial
34 chr5:40834400-40835800 ZNF genes & repeats Fetal Brain Male brain
35 chr5:40834400-40835800 Bivalent/Poised TSS HepG2 liver
36 chr5:40834400-40836000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr5:40834400-40836000 Active TSS Fetal Heart heart
38 chr5:40834400-40836200 Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr5:40834400-40836200 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr5:40834400-40836200 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
41 chr5:40834400-40836200 Active TSS Liver Liver
42 chr5:40834400-40836200 Active TSS Fetal Kidney kidney
43 chr5:40834400-40836400 Active TSS Aorta Aorta
44 chr5:40834400-40836400 Active TSS Lung lung
45 chr5:40834400-40836400 Active TSS GM12878-XiMat blood
46 chr5:40834400-40836400 Active TSS HSMMtube muscle
47 chr5:40834400-40836600 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
48 chr5:40834400-40836600 Active TSS Fetal Brain Female brain
49 chr5:40834400-40836600 Active TSS Fetal Intestine Large intestine
50 chr5:40834400-40836600 Active TSS Psoas Muscle Psoas

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