The 2.0 version of rSNPBase

Variant report

Variant rs154278
Chromosome Location chr5:40783149-40783150
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40756200-40797200 Weak transcription Gastric stomach
2 chr5:40756400-40785200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr5:40756400-40797400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr5:40765400-40796600 Weak transcription Right Ventricle heart
5 chr5:40765600-40796600 Weak transcription Placenta Amnion Placenta Amnion
6 chr5:40771600-40788600 Weak transcription Fetal Stomach stomach
7 chr5:40773000-40788200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr5:40776200-40797000 Weak transcription Colonic Mucosa Colon
9 chr5:40776400-40784800 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr5:40776600-40786200 Weak transcription GM12878-XiMat blood
11 chr5:40776600-40787600 Weak transcription Hela-S3 cervix
12 chr5:40776800-40784600 Weak transcription HUVEC blood vessel
13 chr5:40777000-40784000 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr5:40777000-40784200 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr5:40777000-40784400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr5:40777000-40784400 Weak transcription Brain Inferior Temporal Lobe brain
17 chr5:40777000-40784400 Weak transcription Fetal Kidney kidney
18 chr5:40777000-40787800 Weak transcription HMEC breast
19 chr5:40777000-40788000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr5:40777000-40788200 Weak transcription Brain Anterior Caudate brain
21 chr5:40777000-40789400 Weak transcription Fetal Heart heart
22 chr5:40777000-40796600 Weak transcription Stomach Smooth Muscle stomach
23 chr5:40777000-40796600 Weak transcription Thymus Thymus
24 chr5:40777000-40796800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr5:40777000-40797000 Weak transcription H1 Cell Line embryonic stem cell
26 chr5:40777200-40784000 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr5:40777200-40784200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr5:40777200-40786200 Weak transcription K562 blood
29 chr5:40777200-40787800 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr5:40777200-40787800 Weak transcription Primary B cells from cord blood blood
31 chr5:40777200-40787800 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr5:40777200-40788000 Weak transcription Primary hematopoietic stem cells blood
33 chr5:40777200-40788000 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr5:40777200-40788000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr5:40777200-40788200 Weak transcription Primary T cells from cord blood blood
36 chr5:40777200-40788200 Weak transcription Dnd41 blood
37 chr5:40777200-40791400 Weak transcription Brain Angular Gyrus brain
38 chr5:40777200-40796000 Weak transcription Lung lung
39 chr5:40777200-40796600 Weak transcription Fetal Thymus thymus
40 chr5:40777200-40796800 Weak transcription Rectal Smooth Muscle rectum
41 chr5:40777400-40783400 Weak transcription Ovary ovary
42 chr5:40777400-40787800 Weak transcription Fetal Brain Female brain
43 chr5:40777600-40784400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr5:40777600-40788400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr5:40777600-40789400 Weak transcription Monocytes-CD14+_RO01746 blood
46 chr5:40777600-40792000 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr5:40777600-40792800 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr5:40777600-40795200 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr5:40777600-40795600 Weak transcription iPS-18 Cell Line embryonic stem cell
50 chr5:40777800-40788400 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015